DY270948

Overview
NameDY270948
Unique NameDY270948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1161
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.637e-33
Identity = 81/241 (33.61%), Postives = 139/241 (57.68%), Query Frame = 1
Query:    7 LTFYNMSYFVDMPAEM---KTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV-SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            L F N+ Y V +       +  GV      LL  VSG    G + A++G SGAGK+TL+D LAGR   G + G + ++G    Q    +V S Y  Q+D+  P +TV E+L++++  RL   +   K+   V+ +++ + L++  ++++G  G  G+S  +R+R++I ++++ +P ++F+DEPTSGLD+  A +V++ ++    +G  V+ +IHQPS  I E  D L++L RG  V    P
Sbjct:   73 LNFNNLQYDVTLRRRFGFSRQNGVKT----LLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLSKSKKMERVEALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPSARIVELLDRLIILSRGKSVFNGSP 309          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.444e-33
Identity = 86/255 (33.73%), Postives = 145/255 (56.86%), Query Frame = 1
Query:   67 VGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEV 819
            + + R  L+ +V G   PG L A+MG SGAGKTTL++ LA R   G       +   +G+P + +       Y +Q+D+    +T  E L++ A +R+   +  K++   VD+V++ + L    ++++G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD+  AA V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G       + +++F  +    +    YNP  + ++V
Sbjct:   94 IPKPRKHLIKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVIQDLSLIKCQNTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLG----TPVEAVDFFSFIGA--QCPTNYNPADFYVQV 341          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 4.498e-33
Identity = 88/251 (35.06%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   79 RLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEV 819
            R  LL +V G   PG L A+MG SGAGKTTL++ LA R   G      G   ++G P + +       Y +Q+D+    +T  E L++ A +R+   +  ++R   VD+V++ + L     +++G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD+  A  V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G       + +++F  V    +    YNP  + ++V
Sbjct:  109 RKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLG----TPSEAVDFFSYVGA--QCPTNYNPADFYVQV 352          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: ABCG3_MOUSE (ATP-binding cassette sub-family G member 3 OS=Mus musculus GN=Abcg3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.916e-32
Identity = 97/285 (34.04%), Postives = 153/285 (53.68%), Query Frame = 1
Query:    7 LTFYNMSY--FVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEVHNISFENQLGND 855
            L+F+N+SY   V     ++ +    +RL    ++SG  +PG L A+MG     ++ L+DVLA R+    + GDI I+G P+    F   SGY  QND+    VTV ++L +SA LRL   +   +++  ++EV+EL+ L    +       +   S E RKR +IA+ELV    I+F+D+PT+GLD R    V+  +R     GRT++ +I+QP   IF+ FD L L+   G+V++ GP    +   +EYF +       +   NP  + L+V N  F N L  +
Sbjct:   37 LSFHNISYQETVQSGFPLRKKAYVIERLS---NISGIMKPG-LNAIMGPQDGSRSLLLDVLAARRDPRGLSGDILINGKPR-PANFKCTSGYVPQNDVVLGTVTVRDNLEFSAALRLPVTITRDEKRRRINEVLELLHLNKEQN-------IKPRSKELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKKGRTIIFSINQPQYSIFKFFDSLTLV-ASGKVMFHGP----AQDALEYFRSAG--YNYESHNNPADFFLDVINGGFSNILDTE 302          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.916e-32
Identity = 95/309 (30.74%), Postives = 166/309 (53.72%), Query Frame = 1
Query:    7 LTFYNMSYFVDMP-----AEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV-SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEV-HNISFENQLGNDFVEFYANPSPSSKKKGTYQ 912
            L+F N+SY V +      +  KT  V      LL  ++G  R G + A++G SGAGK+TL+D LAGR     ++G + ++G    Q    +V S Y  Q+D+  P +TV E+L++++  RL   +   K+   V+ +++ + L++  D+++G  G  G+S  +R+R++I ++++ +P ++F+DEPTSGLD+  A +V++ ++    +G  V+ +IHQPS  I    D L++L  G  V    P+      L  +F +  G P I E  N   + L+V   +   ++   D VEF      +   + T Q
Sbjct:   63 LSFNNLSYNVVLRRRFDFSRRKTASVKT----LLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPV-----SLPSFFSSF-GRP-IPEKENITEFALDVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQ 360          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.916e-32
Identity = 73/229 (31.88%), Postives = 136/229 (59.39%), Query Frame = 1
Query:   31 FVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            F   PA++KT         LL+ ++G  + G + A++G SGAGK+TL+D LAG+   G ++G + ++G          +S Y  Q D+  P +TV E+L+++A  RL   +   K++  V+ +++ + L ++ ++++G  G  G+S  +R+R++I  +++ +P ++F+DEPTSGLD+ +A +V++ ++    +G  V+ +IHQPS  I E  D +++L  G  V    P
Sbjct:   41 FGHSPAKIKT---------LLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGLTTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVQVLKKIARSGSIVIMSIHQPSGRIMEFLDRVIVLSSGQIVFSDSP 260          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.808e-32
Identity = 82/219 (37.44%), Postives = 129/219 (58.90%), Query Frame = 1
Query:   79 RLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 723
            R  LL + SG   PG L A+MG SGAGKTTL++  A R + G       I   +G+P + +       Y +Q+D+    +T  E L++ A +R+   +  K++   VD+V++ + L    ++++G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD+  A  V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G  G
Sbjct:  100 RKHLLKNDSGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLGTPG 317          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.447e-31
Identity = 80/229 (34.93%), Postives = 135/229 (58.95%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPG 768
            Q+L +VSG  +   LTAL+G + +GK+ L+ +L+ R   G +EG+I +SG  KN +   +  GY  +N +     TV E+L   A LR S      ++  +V+ V++ + L  + D +VG  G  GLS   ++ L+IAVEL A P SI+ +DEP +GLD+++A +++  ++    +G +++C++ QPS  I E FD +L+L   G  +Y   +G +  KL+ YF+ + G
Sbjct:  775 QILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGL-KNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLGEVADFIVGDMG-KGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLILDLNGNTVYYDTMGRDLSKLVNYFKRIHG 1001          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.499e-31
Identity = 85/247 (34.41%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEVHNI 828
            + ++S   R G + A++G SG G+ +L+DV+ GR  GG I+ G I I+G P + +   +   +  Q++   P +TV E+L + A +RL       +R   V++V+  + L+   D+ VG   V GLS  +R+R++I V+L+ NP I+ +DEPTSGLD+  A  +++T+       R V+ ++HQP  DIF  FD L+LL   G  IY G   H    +++YF A+ G P  + + NP  + +++ +I
Sbjct:   88 IQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIKSGQIWINGQPSSPQLVRKCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCADTRVGNMYVRGLSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGAAQH----MVQYFTAI-GYPCPRYS-NPADFYVDLTSI 327          
BLAST of DY270948 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.600e-30
Identity = 83/247 (33.60%), Postives = 140/247 (56.68%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPGTWMLEVHNI 828
            + ++S   R G + A++G +G G+ TL+DV+ GR  GG ++ G I I+G P   +   +   +  Q D   P +TV E+L + A +RL       +R   V++V+  + L+   ++ VG   V G+S  +R+R++I V+L+ NP I+ +DEPTSGLD+  A  ++RT+       R V+ ++HQP  DIF  FD L+LL   G  IY G   H    +++YF ++ G P  + + NP  + +++ +I
Sbjct:  110 IRNLSFKVRSGQMLAIIGSAGCGRATLLDVITGRDHGGKMKSGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNLTVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGVAQH----MVQYFTSI-GYPCPRYS-NPADFYVDLTSI 349          
The following BLAST results are available for this feature:
BLAST of DY270948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
AB19G_ARATH2.637e-3333.61ABC transporter G family member 19 OS=Arabidopsis ... [more]
WHITE_LUCCU3.444e-3333.73Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
WHITE_DROME4.498e-3335.06Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
ABCG3_MOUSE2.916e-3234.04ATP-binding cassette sub-family G member 3 OS=Mus ... [more]
AB18G_ARATH2.916e-3230.74ABC transporter G family member 18 OS=Arabidopsis ... [more]
AB17G_ARATH2.916e-3231.88ABC transporter G family member 17 OS=Arabidopsis ... [more]
WHITE_CERCA3.808e-3237.44Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
PDR1_SCHPO1.447e-3134.93ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
ABCG8_HUMAN5.499e-3134.41ATP-binding cassette sub-family G member 8 OS=Homo... [more]
ABCG8_RAT1.600e-3033.60ATP-binding cassette sub-family G member 8 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270948 ID=DY270948; Name=DY270948; organism=Citrus clementina; type=EST; length=1161bp
CTTTCACTTACATTCTACAATATGAGCTACTTCGTGGATATGCCTGCAGA
AATGAAGACTGAAGGAGTTGGAGAAGATCGTCTTCAACTGCTACACAGTG
TCAGCGGTGCATTCAGGCCAGGAATATTGACAGCATTAATGGGTGTAAGT
GGTGCGGGGAAGACAACTCTGATGGATGTATTGGCAGGAAGGAAGACCGG
AGGATATATTGAAGGGGACATTAAAATTTCTGGTTACCCCAAAAACCAAG
AAACATTTGCTCGAGTGAGTGGTTATTGTGAACAGAATGACATTCATTCA
CCCTATGTTACTGTCTATGAATCTCTCCTCTACTCAGCATGGCTTCGTCT
TTCTTCAGACGTTGATACGAAAAAAAGAAAGATGTTTGTTGATGAAGTTA
TGGAGCTTGTTGAGCTCAAATCATTGAATGATTCTATGGTTGGCCTTCCC
GGAGTAAGTGGTCTTTCGACAGAGCAAAGGAAGAGATTGACGATTGCTGT
AGAATTGGTTGCTAACCCTTCTATCATCTTCATGGATGAGCCTACATCTG
GGCTTGATGCTAGAGCTGCTGCTATTGTCATGCGTACTGTTAGAAATACA
GTGGATACAGGGAGAACAGTTGTGTGTACAATCCACCAGCCAAGCATAGA
CATTTTTGAAGCATTTGACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCG
TCATTTATGCTGGACCTCTTGGTCACGAATCTCACAAGCTCATAGAGTAT
TTTGAGGCTGTTCCAGGGGTTCCTAAAATTAAGGAAGCATACAATCCTGG
AACATGGATGCTGGAAGTCCATAACATTTCATTTGAGAATCAACTGGGAA
ATGATTTTGTTGAATTTTATGCCAATCCATCCCCTTCTTCAAAGAAAAAG
GGAACTTATCAAAAAGCTTATTACTCCCACCCCTGGCTCCGTCAATTCTC
TATTTCCAAACCAAAATATTCAACCAATTTTTAACCCAATTTTGGGGTTT
GTTTCTGGAAAAAAAATTTGGTTCTTTTTGGAAAAAACCCCCCAATAACA
AAGGGTTTCCCGATTTTGGCACGGGCCCCTTTGGCTCTTTTCCCTTTTTT
TTTGGTGTTTTTACTCTTCCGGGGGGAAAAAAAGGAGACAAAAAAAACTT
TCCCCAAAATA
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