DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.131e-26
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2 
Query:  221 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E++ QE ++G WT+EED +L  Y+  HG G+WN + +                              +GLKR GKSCRLRW+NYL P++ +GN T QE+ LI+ LH   GNR
Sbjct:    8 EKENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRK-----------------------------TGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNR 90

HSP 2 Score: 47.7506 bits (112), Expect = 6.131e-26
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   86 LLGN-RWSLIAKRVPGRTDNQVKNYWNTHLSKK 117
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.136e-26
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2 
Query:  221 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E++ QE ++G WT+EED +L  Y+  HG G+WN + +                              +GLKR GKSCRLRW+NYL P++ +GN T QE+ LI+ LH   GNR
Sbjct:    8 EKENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRK-----------------------------TGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNR 90

HSP 2 Score: 47.7506 bits (112), Expect = 6.136e-26
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   86 LLGN-RWSLIAKRVPGRTDNQVKNYWNTHLSKK 117
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.028e-25
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++RG WT EED +L++YI  +GEG W  + K AG                             LKR GKSCRLRW+NYL+ D+KRGN+TP+E+ L+++LHS  GNR
Sbjct:   12 IKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAG-----------------------------LKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNR 88

HSP 2 Score: 45.0542 bits (105), Expect = 1.028e-25
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            +GN RWS IA  LPGRTDNEIKNYW + + ++
Sbjct:   85 LGN-RWSLIAGHLPGRTDNEIKNYWNSHLSRK 115
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.357e-25
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 2 
Query:  206 ECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EC   EE +  ++RG W  EED +L  Y+  HGEG W  +++                              SGLKR GKSCRLRW NYL+P+IKRG+++PQEQ LI+ +H   GNR
Sbjct:    2 ECKR-EEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRR-----------------------------SGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNR 88

HSP 2 Score: 48.9062 bits (115), Expect = 1.357e-25
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA  LPGRTDNE+KNYW T + K+
Sbjct:   84 LLGN-RWSLIAGRLPGRTDNEVKNYWNTHLNKK 115
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.756e-25
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++RGPWT+EED +L  +I + GEGRW  + K AG                             L R GKSCRLRW+NYL+P +KRG +T  E+ LIL LH   GNR
Sbjct:   23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG-----------------------------LLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99

HSP 2 Score: 49.6766 bits (117), Expect = 1.756e-25
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 770
            L+GN RWS IA  +PGRTDNEIKNYW T ++K+  +  I+
Sbjct:   95 LLGN-RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGID 133
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.833e-25
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            L+RG WT EED LL +YI +HGEG W  + K AG                             L R GKSCRLRW+NYL+ D+KRGN++ +E+ +I++LH+  GNR
Sbjct:   12 LKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAG-----------------------------LLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNR 88

HSP 2 Score: 47.3654 bits (111), Expect = 3.833e-25
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            +GN RWS IA  LPGRTDNEIKNYW + + +Q
Sbjct:   85 LGN-RWSLIASHLPGRTDNEIKNYWNSHLSRQ 115
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.400e-25
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            L++GPWT  ED +L  Y+ +HGEG WN V K                              +GL R GKSCRLRW N+L+P++K+G  T +E+ LI++LHSK GN+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKN-----------------------------TGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNK 116

HSP 2 Score: 47.7506 bits (112), Expect = 8.400e-25
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 755
            +GN +W+++A  LPGRTDNEIKNYW TR+++  R
Sbjct:  113 MGN-KWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.400e-25
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            L++GPWT  ED +L  Y+ +HGEG WN V K                              +GL R GKSCRLRW N+L+P++K+G  T +E+ LI++LHSK GN+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKN-----------------------------TGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNK 116

HSP 2 Score: 47.7506 bits (112), Expect = 8.400e-25
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 755
            +GN +W+++A  LPGRTDNEIKNYW TR+++  R
Sbjct:  113 MGN-KWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.098e-24
Identity = 44/106 (41.51%), Postives = 53/106 (50.00%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            LRRGPWT EED  L  +I  +G   W  + K AG                             L R GKSCRLRW NYL+PD+KRG  +  E+ LIL+LH+  GNR
Sbjct:   12 LRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAG-----------------------------LLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNR 88

HSP 2 Score: 56.6102 bits (135), Expect = 1.098e-24
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 779
            +GN RWS+IA  LPGRTDNEIKNYW TR++K+ R   ++ N+
Sbjct:   85 LGN-RWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNT 125
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.440e-24
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            D+  +++GPWT EED  L  +I  +G+  W  V K AG                             LKR GKSCRLRW NYL+PD+KRG L+  E+ L+++LHS+ GNR
Sbjct:    8 DKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAG-----------------------------LKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNR 88

HSP 2 Score: 52.373 bits (124), Expect = 1.440e-24
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 770
            +GN RWSKIA  LPGRTDNEIKN+W T ++K+  ++ I+
Sbjct:   85 LGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGID 122
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GL1_ARATH6.131e-2639.29Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY6.136e-2639.29Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB12_ARATH1.028e-2543.40Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB82_ARATH1.357e-2541.03Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB5_ARATH1.756e-2542.45Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBP_MAIZE3.833e-2542.45Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
GAM1_ORYSJ8.400e-2540.57Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI8.400e-2540.57Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB2_PHYPA1.098e-2441.51Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
ODO1_PETHY1.440e-2440.00Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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