DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.160e-24
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 2 
Query:  224 EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +  + +++GPW  EED  LT YI+++G G W  + K AG                             L R GKSCRLRW+NYL+PDI+RG  +  E+  I+ LH+  GN+
Sbjct:    8 DQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAG-----------------------------LNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNK 89

HSP 2 Score: 55.0694 bits (131), Expect = 3.160e-24
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 770
            L+GN +WSKIA  LPGRTDNEIKNYW T ++K+  Q+ I+
Sbjct:   85 LLGN-KWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGID 123
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.164e-24
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = 2 
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            L RG WT +ED  L  YI +HG   W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E+  I+ LH   GN+
Sbjct:   14 LNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNK 90

HSP 2 Score: 54.6842 bits (130), Expect = 3.164e-24
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            L+GN +WSKIA CLPGRTDNEIKN W T ++K+  Q
Sbjct:   86 LLGN-KWSKIAACLPGRTDNEIKNVWNTHLKKKVAQ 120
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.184e-24
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++  L++GPWT EED +L  +I +HG G W  + K AG                             L R GKSCRLRW+NYL+PDIKRGN + +E+  I+ LH   GNR
Sbjct:    8 EKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAG-----------------------------LLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNR 88

HSP 2 Score: 47.3654 bits (111), Expect = 3.184e-24
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA  LPGRTDNEIKN W T ++K+
Sbjct:   84 LLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKR 115
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.392e-24
Identity = 46/109 (42.20%), Postives = 58/109 (53.21%), Query Frame = 2 
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++EL RG WT  ED +L  YI  HGEG+W+ +   AG                             LKR GKSCRLRW NYL+P IKRGN++  E+ LI+ LH+  GNR
Sbjct:   11 REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAG-----------------------------LKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNR 90

HSP 2 Score: 46.2098 bits (108), Expect = 5.392e-24
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA  LPGRTDNEIKN+W + ++K+
Sbjct:   86 LLGN-RWSLIAGRLPGRTDNEIKNHWNSNLRKR 117
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.615e-23
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 2 
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++ ++RG WT +ED  L  Y+  HGEG+W  V + AG                             L+R GKSCRLRWLNYL+P+I+RGN++  E+ LI+ LH   GNR
Sbjct:    9 KEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAG-----------------------------LRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNR 88

HSP 2 Score: 46.9802 bits (110), Expect = 2.615e-23
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 752
            L+GN RWS IA  LPGRTDNEIKNYW + + ++A
Sbjct:   84 LLGN-RWSLIAGRLPGRTDNEIKNYWNSTLGRRA 116
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.135e-22
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            D+  +++GPWT EED +L  YI +HG G W  +                                +GL R  KSCRLRW NYL+P IKRG+ T  E+ +I+ L +  GNR
Sbjct:    8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSN-----------------------------TGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNR 88

HSP 2 Score: 48.9062 bits (115), Expect = 6.135e-22
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSE 782
            L+GN RW+ IA  LP RTDN+IKNYW T ++K+  +L    N +
Sbjct:   84 LLGN-RWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENGK 126
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.140e-22
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 2 
Query:  212 NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +S    Q ++R+G W+ EED  L ++I +HG G W+ V + A                              L R GKSCRLRW+NYL+PD+KRG  + QE+  I+ LH   GNR
Sbjct:    5 SSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAA-----------------------------LNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNR 90

HSP 2 Score: 52.373 bits (124), Expect = 6.140e-22
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 770
            ++GN RWS+IA  LPGRTDNEIKN+W + ++K+ RQ  I+
Sbjct:   86 ILGN-RWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGID 124
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.714e-19
Identity = 42/110 (38.18%), Postives = 56/110 (50.91%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            D+  +++GPW+ EED  L  YI   G G         GN I              L  K+      GLKR GKSCRLRWLNYL+P+IK G  + +E+ +I  L+   G+R
Sbjct:    8 DKANVKKGPWSPEEDAKLKSYIENSGTG---------GNWI-------------ALPQKI------GLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSR 89

HSP 2 Score: 48.1358 bits (113), Expect = 5.714e-19
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            RWS IA  LPGRTDN+IKNYW TR++K+
Sbjct:   89 RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.081e-18
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            D+  ++RGPW+ EED  L  YI + G G         GN I              L  K      +GL+R GKSCRLRWLNYL+P+I+ G+ T +E  +I  L +  G+R
Sbjct:    8 DKANVKRGPWSPEEDAKLKDYIEKQGTG---------GNWI-------------ALPHK------AGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSR 89

HSP 2 Score: 44.2838 bits (103), Expect = 6.081e-18
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 3 
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            RWS IA  L GRTDN+IKNYW T+++K+
Sbjct:   89 RWSVIAAHLQGRTDNDIKNYWNTKLKKK 116
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.611e-17
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++  + +G WT EED LL  YI +HGEG W  + + AG                             L+R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAG-----------------------------LQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB39_ARATH3.160e-2436.04Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE3.164e-2439.62Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB4_ORYSJ3.184e-2440.00Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
TT2_ARATH5.392e-2442.20Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYBC_MAIZE2.615e-2339.45Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB06_ANTMA6.135e-2236.36Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB3_HORVU6.140e-2236.52Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
RAX3_ARATH5.714e-1938.18Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH6.081e-1838.18Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB3_ARATH1.611e-1740.91Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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