DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.875e-17
Identity = 34/107 (31.78%), Postives = 49/107 (45.79%), Query Frame = 2
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   +H++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E   I E H + GNR
Sbjct:   86 ELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNR 162          

HSP 2 Score: 45.4394 bits (106), Expect = 4.875e-17
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 779
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q     NS
Sbjct:  159 LGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQEGYLQNS 199          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.209e-17
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 2
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   +H++G  +W+++AK                                  R GK CR RW N+L PD+K+ + T +E  +I   H + GNR
Sbjct:   83 ELVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKG------------------------------RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNR 159          

HSP 2 Score: 44.669 bits (104), Expect = 8.209e-17
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  156 MGN-RWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.044e-16
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +Q+LR+G W+ EED  L +YI +HG G W+ V K AG                             L+R GKSCRLRW+NYL+PD+KRG  +  E+ LI+ELH+  GNR
Sbjct:    9 KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNR 88          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.801e-16
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 2
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I E H + GNR
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNR 160          

HSP 2 Score: 45.0542 bits (105), Expect = 1.801e-16
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  157 LGN-RWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.802e-16
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 2
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I E H + GNR
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNR 160          

HSP 2 Score: 45.0542 bits (105), Expect = 1.802e-16
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  157 LGN-RWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.968e-16
Identity = 46/110 (41.82%), Postives = 55/110 (50.00%), Query Frame = 2
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    RG WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T  E  LI++LHS  GN+
Sbjct:    8 EKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNK 88          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.968e-16
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  L +YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  +I++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNK 88          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.968e-16
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = 2
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.140e-16
Identity = 33/107 (30.84%), Postives = 48/107 (44.86%), Query Frame = 2
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T  E  +I E H + GNR
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNR 160          

HSP 2 Score: 45.0542 bits (105), Expect = 5.140e-16
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  157 LGN-RWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.183e-16
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = 2
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB_XENLA4.875e-1731.78Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBA_XENLA8.209e-1730.84Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYB86_ARATH1.044e-1642.20Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYBA_HUMAN1.801e-1630.84Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_MOUSE1.802e-1630.84Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYB38_MAIZE3.968e-1641.82Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB30_ANTMA3.968e-1640.00Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB08_ANTMA3.968e-1640.91Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYBA_CHICK5.140e-1630.84Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB4_ARATH5.183e-1640.91Transcription repressor MYB4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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