DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.183e-16
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  LT YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN + +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNK 88
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 8.825e-16
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +  ++ ++G  RW+ +AK                                  R GK CR RW N+L P++K+ + T +E  +I + H + GNR
Sbjct:   18 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 94

HSP 2 Score: 44.2838 bits (103), Expect = 8.825e-16
Identity = 17/35 (48.57%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN +KN+W + ++++  Q
Sbjct:   91 LGN-RWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQ 124
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.841e-16
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T  E  +I++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNK 88
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.841e-16
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++    +G WT EED  L  YI  HGEG W  + + AG                             L+R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNK 88
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.132e-15
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I + H + GNR
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 165

HSP 2 Score: 44.669 bits (104), Expect = 1.132e-15
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  162 LGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 1.132e-15
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I + H + GNR
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 165

HSP 2 Score: 44.669 bits (104), Expect = 1.132e-15
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  162 LGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.132e-15
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I + H + GNR
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 165

HSP 2 Score: 44.669 bits (104), Expect = 1.132e-15
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  162 LGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.132e-15
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            EL +GPWT EED  +   + ++G  RW+++AK                                  R GK CR RW N+L P++K+ + T +E  +I + H + GNR
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG------------------------------RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 165

HSP 2 Score: 44.669 bits (104), Expect = 1.132e-15
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            +GN RW++IA+ LPGRTDN IKN+W + ++++  Q
Sbjct:  162 LGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.572e-15
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  215 SSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +S    +++++G W+ EED+ L  Y+  +G+G W+ VAK AG                             L+R GKSCRLRW+NYL+PD+KRG  +PQE+ LI+  HS  GNR
Sbjct:   10 ASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNR 94
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.359e-15
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = 2 
Query:  221 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E   + LR+G WT EED+LL   I+++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L+  E  L+L LH   GNR
Sbjct:    2 EGSSKGLRKGAWTTEEDSLLRQCINKYGEGKWHQVP-----------------------------VRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNR 84
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB1_HORVU5.183e-1640.91Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB_AVIMB8.825e-1629.91Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB6_ARATH8.841e-1640.00Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB32_ARATH8.841e-1640.00Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB_CHICK1.132e-1529.91Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_HUMAN1.132e-1529.91Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_BOVIN1.132e-1529.91Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYB_MOUSE1.132e-1529.91Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB46_ARATH2.572e-1538.60Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB75_ARATH3.359e-1541.07Transcription factor MYB75 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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