DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.184e-14
Identity = 45/150 (30.00%), Postives = 62/150 (41.33%), Query Frame = 2 
Query:  107 STLSLASSLDQQKPRRDTKMHTMRAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            S+ S +SSL ++ P          A + +G K+   S     +   +G WT EED  L   +  HG  RW  +A                CL                 R G+ CR RW N L P IKR   T +E  +IL+ HSK+GN+
Sbjct:  721 SSSSSSSSLSKKSP----------AVKKSGLKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLL-------------CL-----------------RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNK 830

HSP 2 Score: 34.6538 bits (78), Expect = 1.184e-14
Identity = 12/38 (31.58%), Postives = 27/38 (71.05%), Query Frame = 3 
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 779
            +W++I++ LPGRT+  IKN+W + ++++  +   + +S
Sbjct:  830 KWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSS 867
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.277e-14
Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = 2 
Query:  224 EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E  + LR+G WT EED LL   I ++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L   E  L+L LH   GNR
Sbjct:    3 ESPKGLRKGTWTTEEDILLRQCIDKYGEGKWHRVP-----------------------------LRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNR 84
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.574e-14
Identity = 31/104 (29.81%), Postives = 47/104 (45.19%), Query Frame = 2 
Query:  245 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +  W  EED +L  Y+ Q+G+  W  V K                              +GL     SCR RW+N+LKP +K+G  T +E+  +L+LH+  GN+
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKR-----------------------------TGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNK 92

HSP 2 Score: 42.743 bits (99), Expect = 1.574e-14
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFETVRCYWMPRIAAKKGTKIRL 854
            ++GN +WS++A+  PGRTDNEIKN+W       AR++ ++      +         R AA+ G K+ L
Sbjct:   88 VLGN-KWSQMAREFPGRTDNEIKNFW------NARRMRLKGKGLPVYPDEVREQAIRTAAQYGVKVEL 148
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.667e-14
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = 2 
Query:  221 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E   + LR+G WT EED+LL   I ++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L+  E  L+L LH   GNR
Sbjct:    2 EGSSKGLRKGAWTAEEDSLLRLCIDKYGEGKWHQVP-----------------------------LRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNR 84
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.178e-14
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 2 
Query:  221 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            E   + LR+G WT EED+LL   I ++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG  +  E  L+L LH   GNR
Sbjct:    2 EGSSKGLRKGAWTAEEDSLLRQCIGKYGEGKWHQVP-----------------------------LRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNR 84
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 4.409e-14
Identity = 30/107 (28.04%), Postives = 46/107 (42.99%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +L +GPWT EED  +   + ++G   W ++AK                                  R GK CR RW N+L P++K+ + T +E  +I + H   GNR
Sbjct:   80 DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRG------------------------------RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNR 156

HSP 2 Score: 43.5134 bits (101), Expect = 4.409e-14
Identity = 16/33 (48.48%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            ++GN RW++IA+ LPGRTDN +KN+W + ++++
Sbjct:  152 VLGN-RWAEIAKLLPGRTDNAVKNHWNSTIKRK 183
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.415e-14
Identity = 31/107 (28.97%), Postives = 46/107 (42.99%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +L +GPWT EED  +   + ++G  +W ++AK                                  R GK CR RW N+L P++K+   T +E  +I E H   GNR
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG------------------------------RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNR 156

HSP 2 Score: 43.5134 bits (101), Expect = 4.415e-14
Identity = 16/33 (48.48%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            ++GN RW++IA+ LPGRTDN +KN+W + ++++
Sbjct:  152 VLGN-RWAEIAKMLPGRTDNAVKNHWNSTIKRK 183
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.416e-14
Identity = 31/107 (28.97%), Postives = 46/107 (42.99%), Query Frame = 2 
Query:  236 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            +L +GPWT EED  +   + ++G  +W ++AK                                  R GK CR RW N+L P++K+   T +E  +I E H   GNR
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG------------------------------RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNR 156

HSP 2 Score: 43.5134 bits (101), Expect = 4.416e-14
Identity = 16/33 (48.48%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            ++GN RW++IA+ LPGRTDN +KN+W + ++++
Sbjct:  152 VLGN-RWAEIAKMLPGRTDNAVKNHWNSTIKRK 183
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.979e-13
Identity = 36/104 (34.62%), Postives = 48/104 (46.15%), Query Frame = 2 
Query:  245 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            R  W+ EED LL  Y+ Q G   W++V++                                L R  KSC  RW NYLKP IK+G+LT +EQ L++ L  K GN+
Sbjct:    4 RQRWSGEEDALLRAYVRQFGPREWHLVSERMNK---------------------------PLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNK 80

HSP 2 Score: 32.7278 bits (73), Expect = 7.979e-13
Identity = 23/104 (22.12%), Postives = 41/104 (39.42%), Query Frame = 3 
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ-----LNIESNSETFFETVRCYWMPRIAAKKGTKIRLPLKLLLKNFSGQTIQFFQLSLSVSPPT-FIPPCPAT 959
            +W KIA  +PGRT   +  +W    +KQ R+       +E   E+ ++ +   +  ++  ++   +           +     F      V PP   IPP  AT
Sbjct:   80 KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEPIDESKYDRILESFAEKLVKERSNVVPAAAAAATVVMANSNGGFLHSEQQVQPPNPVIPPWLAT 183
[Close]
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.996e-13
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 2 
Query:  245 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            R  W  EED +L  Y+ Q+G   W++V++     +H                           R  KSC  RW NYL+P IK+G+LT  EQ L++ L +K GN+
Sbjct:    9 RQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLH---------------------------RDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNK 85

HSP 2 Score: 32.7278 bits (73), Expect = 7.996e-13
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 3 
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQL 761
            +W KIA  +PGRT   +  +W    +KQ R+L
Sbjct:   85 KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREL 116
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYBAA_DICDI1.184e-1430.00Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MY113_ARATH1.277e-1441.44Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MY104_ARATH1.574e-1429.81Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB90_ARATH1.667e-1441.07Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY114_ARATH2.178e-1440.18Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYBB_XENLA4.409e-1428.04Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_MOUSE4.415e-1428.97Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN4.416e-1428.97Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
AS1_ARATH7.979e-1334.62Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ7.996e-1332.69Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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