DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.269e-12
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 2
Query:  245 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            R  W  EED +L  Y+ Q+G   W++V++                                L R  KSC  RW NYL+P IK+G+LT +EQ L++ L +K GN+
Sbjct:    4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMN---------------------------VALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNK 80          

HSP 2 Score: 32.7278 bits (73), Expect = 2.269e-12
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQL 761
            +W KIA  +PGRT   +  +W    +KQ R+L
Sbjct:   80 KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREL 111          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.333e-12
Identity = 33/133 (24.81%), Postives = 52/133 (39.10%), Query Frame = 2
Query:  179 AARAAGTKRE---CNSSEEDQQELRRG----PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            A R+ G  ++   C  ++ D  E R G     WT EED  L   +  +G+  W  +A    N                              R+ + C+ RWL  L PD+ +G  T +E   ++EL  K+G +
Sbjct:    2 ARRSRGEDQDELHCQDTDSDVPEQRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFPN------------------------------RSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTK 104          

HSP 2 Score: 45.0542 bits (105), Expect = 6.333e-12
Identity = 19/44 (43.18%), Postives = 32/44 (72.73%), Query Frame = 3
Query:  618 DEVLIEFNYAMLIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            +E  I F    ++GN RW++IA+ LPGRTDN +KN+W + ++++
Sbjct:  141 EEDRIIFEAHKVLGN-RWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.943e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  227 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            D+ +++RGPW+ EED+ L  YI ++G G         GN I                      + +GL+R GKSCRLRWLNYL+P+IK G+ + +E  +I  L +  G+R
Sbjct:    8 DKTKVKRGPWSPEEDSKLRDYIEKYGNG---------GNWISF-------------------PLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSR 89          
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RS2_MAIZE2.269e-1232.69Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYBB_CHICK6.333e-1224.81Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
RAX1_ARATH2.943e-1136.36Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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