DY270953

Overview
NameDY270953
Unique NameDY270953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1085
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270953_ssr19 microsatellite DY270953_ssr19:19..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3783 contig Ccv1_Contig3783:1..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270953 vs. ExPASy Swiss-Prot
Match: TCTP_BRABE (Translationally-controlled tumor protein homolog OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.515e-11
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = 3 
Query:   96 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVD-IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 596
            M++Y+D+++GDE+ SD++  K +++   +E+EGK   + G +D   IG N S                  +IV   RLQE   F K  +  Y+K + K +   L++   ER + FK       K ++    + QFF GE M  DG +    Y+E    P  L+  D L+E K
Sbjct:    1 MIIYKDIVSGDEMFSDAYKMKVLDD-YFYELEGKITTEKGGIDESAIGGNASAEDAVEGLEESGTTG--CNIVIAQRLQETQ-FTKAQYKVYIKDYSKKVLEYLTKNKPERVDGFKAASAAGMKRVMGNFKNWQFFTGEKMDQDGMVALMDYREDGKTPYMLFFKDGLEEEK 168
[Close]
BLAST of DY270953 vs. ExPASy Swiss-Prot
Match: TCTP_EMENI (Translationally-controlled tumor protein homolog OS=Emericella nidulans GN=AN0641 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.817e-11
Identity = 53/179 (29.61%), Postives = 83/179 (46.37%), Query Frame = 3 
Query:   96 MLVYQDLLTGDELLSDSFPYKEIENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFD---------KKPFVTYMKRFIKLLTPK-LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 596
            M++Y+D+++GDE+LSD++  K ++ G+L+E +  K++ +   D ++ GANPS                V DI D FRL    A D         K    TYMK+ +K L  K   +E    FKK    A   +L    +    +GESM  D   +   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDTYNIKTVD-GVLYECDCRKYLKKTNEDFELEGANPSAEGGDDEGGAEGGEVMVHDIEDQFRLVWLKAEDGAKPPKDAFKGHLKTYMKKVLKALQDKGAPDETINEFKKGAPAAVNKILKNYDNYDVLMGESMDGDAMHILIDFREDGVTPYATLWKHGLEEMK 178
The following BLAST results are available for this feature:
BLAST of DY270953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_BRABE1.515e-1130.23Translationally-controlled tumor protein homolog O... [more]
TCTP_EMENI9.817e-1129.61Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270953 ID=DY270953; Name=DY270953; organism=Citrus clementina; type=EST; length=1085bp
CGCTCTCTCACCGTTTCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTC
CGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTT
GGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGACTCTTTTC
CCTACAAGGAAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGG
GTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGA
AGGAGCTGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTCG
ACATTGTCGACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAG
CCGTTTGTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCT
GAGTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCA
AGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGC
ATGCATGATGATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGAC
CGACCCAACATTTTTGTATATGGCTGATGCATTGAAGGAGGTGAAGTGCT
AAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAGTTCTAATTTTAATTAT
TGCCCGCGGTTATTTTTAAGTATCTTTTTGTGCTGGTTTACCCGGGGACT
TGTGCTTGCTGTTTTTTTAATTTTTTTTTTGACATAAACAAAATGTTTTT
TTGGCTTTAATTTATGTGGGTTTTTAAGGTTTTGAGATTGAATTTACCAA
TTAAAAAAAAAAAAAAAAAAAAAAACCCAATTTTTTTGTGTAAAATTGTG
CCATTAAACCAAAAGCTTTTGCCTTATCCTTTTTGTTGGCAACGACCAGG
CTCACTACCATGTCAAAAAAAAATCTTTTTTTTTGCGCACCACCGGTATT
ACCTCTTACTGTACTGGGAAAATATTATAGGGTAATACCTAATGTTACCT
GGTATATTTCTAGATCCTCTTCTATTTAAATTTCTCATGGCTGTGTTCCC
TCTGTCCCCCTAGTATGAAATCACTTCCTCCATCC
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