DY270954

Overview
NameDY270954
Unique NameDY270954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.147e-33
Identity = 84/219 (38.36%), Postives = 120/219 (54.79%), Query Frame = 3
Query:  138 GYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLT-----NKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--------ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVA---GVSW----AINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNR 734
            G   RL  L+R AY+NT VYP TS+ L+AYC  PA  L+      N    P    F +     L +++ A  +LE RWSG+ + +WWRNEQFW++  TSA+L AV Q  LKV  G + +F +TSK         +  D  +AELY  +WT+L+ P    L VN+  + A   G  W    A ++   +   L   + F +WV+ HLYPF  GL+GR+++
Sbjct:  589 GGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAA----LMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVNVASMAAAGGGGRWWWWDAPSAAAAAAAAL--PVAFNVWVVVHLYPFALGLMGRRSK 801          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.222e-30
Identity = 70/223 (31.39%), Postives = 125/223 (56.05%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNL--VGIVAG--VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVA 800
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I +      ++ + +   I   G+ E++WSG+ + DW RNEQF++IG T  +  AV    LK+  G   +F +TSK  +   GD FA+LY  +W  LLIP   VL VN+  VG+  G   +W + +    +  L   + F +W++A LYPF  G++G++ + P ++ V +++  +  ++++ A
Sbjct:  650 RLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVVLAVNVGAVGVAVGKAAAWGLLTEQGRFAVL--GMVFNVWILALLYPFALGIMGQRGKRPAVLFVATVMAVAAVAIMYAA 870          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.902e-30
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKV--LAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY--QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVAVDPFTSDETKTNSKR 845
            RL  ++R+AYIN   YP+TS+ L+ Y   P   +    F I +      ++ +++       G++EI+W+G+ + DW RNEQF++IG T+ +  AV   +LK   L G+    T    AS     FAELY  +W  LL P   V+ VN+  I A +  A+  G+     G     L F +W++  +YPF  G++GR ++ P I+ V  ++   I +L  +A+    S   + + +R
Sbjct:  639 RLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSKRPYILFVLIVISFVIIALADIAIQAMRSGSVRLHFRR 874          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.440e-29
Identity = 76/239 (31.80%), Postives = 136/239 (56.90%), Query Frame = 3
Query:  123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAG---VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVA 800
            +++++ +N       RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G+   D+WRNEQF++IG TSA+  AV   ++ +L     +F VTSK   +D +  FA+LY  +W  +LIP   VL+ N+  +G+  G   V   + +  Q    + G L F +WV+  LYPF   ++GR  + P I++V   ++  I +L++VA
Sbjct:  620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKMAVYMGVWTIAQKRHAIMG-LLFNMWVMFLLYPFALAIMGRWAKRPIILVVLLPIIFVIVALVYVA 857          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.148e-29
Identity = 67/226 (29.65%), Postives = 118/226 (52.21%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVA 800
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G+ + DW RNEQF++IG T  +  AV    LK++ G    F +TSK  A+     FA+LY  +W  LLIP   +++VN+  +   V  A      +WGPL          + F +W++  LYPF  G++G+  + P ++ V   +  +  + ++VA
Sbjct:  611 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVA 831          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.219e-28
Identity = 68/226 (30.09%), Postives = 119/226 (52.65%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVA 800
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G+ + DW RNEQF++IG T  +  AV    LK++ G    F +TSK  +   GD FA+LY  +W  LLIP   +++VN+  +   V  A      +WGPL          + F +W++  LYPF  G++G+  + P ++ V   +  +  + ++VA
Sbjct:  641 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVA 861          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.716e-28
Identity = 75/243 (30.86%), Postives = 135/243 (55.56%), Query Frame = 3
Query:  123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAGVS------WAI-NSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVA 800
            +++++ +N       RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G+   D+WRNEQF++IG TSA+  AV   ++ +L     +F VTSK   +D +  FA+LY  +W  +LIP   VL+ N+  +G+  G +      W I    + + G     L F +WV+  LYPF   ++GR  +   I++V   ++  I +L++VA
Sbjct:  620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKTAVYMGVWTIAQKRHAAMG-----LLFNMWVMFLLYPFALAIMGRWAKRSIILVVLLPIIFVIVALVYVA 857          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.922e-27
Identity = 76/225 (33.78%), Postives = 122/225 (54.22%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGI-DTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY---QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVAV 803
            RL+ ++R+AY N   YP++++ ++ Y  LP   L  + +F I +  +    + + +   I   G++EI+W+G+ + DWWRNEQF++IG T  +L AV   +LK L G+    F +T+K  A      FAELY   W+ LL P   V+ VN+  I A    A+  G+   Q  G   G L F +WV+  LYPF  G++GR ++ P  +    +   +  +  +VAV
Sbjct:  627 RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAG-LVFNVWVLVLLYPFALGIMGRWSKRPCALFALLVAACAAVAAGFVAV 850          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.115e-16
Identity = 64/221 (28.96%), Postives = 102/221 (46.15%), Query Frame = 3
Query:   84 WL*GQD*MGQRDWMDLWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQN 731
            W  G   M    +  + YG    L LL  L Y N+   P  SIPL  Y  LP   L++   + P+ S+     +I+LF   +A  + +    G     WW +++  +I G S+  F   + +LK L      F VTSKA+DDD      E  +F +   +S+ +P TTV IVNL+  V G+   +  G    G L+ +L    + + +  P    ++ R++
Sbjct:  489 WAVGLFEMSFSKYSPITYGIKS-LDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCG----GELYLELMLVSFAVVNCLPIYGAMVLRKD 704          
BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 5.313e-16
Identity = 59/195 (30.26%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  159 LLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGP-LFGKLFFAIWVIAHLYPFLKGLLGR 725
            L+  + Y     +   S+PLI Y  LP   LL    + P+ S+     +I+LF+  +   +L+    G     WW +++ W I G S+HLF   +  LK L      F VTSKA+DD+      E  +F++   +S+ +P TTV IVNL+  V G+      G  +WG  L  +L  A + + +  P  + ++ R
Sbjct:  532 LVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGL-----YGLFAWGEGLVLELMLASFAVVNCLPIYEAMVLR 721          
The following BLAST results are available for this feature:
BLAST of DY270954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CSLF7_ORYSJ2.147e-3338.36Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF4_ORYSJ2.222e-3031.39Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF8_ORYSJ2.902e-3031.36Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF3_ORYSI1.440e-2931.80Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF1_ORYSJ7.148e-2929.65Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF2_ORYSJ1.219e-2830.09Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF3_ORYSJ2.716e-2830.86Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF9_ORYSJ3.922e-2733.78Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLG1_ARATH3.115e-1628.96Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLG3_ARATH5.313e-1630.26Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270954 ID=DY270954; Name=DY270954; organism=Citrus clementina; type=EST; length=1215bp
GCTACCTTCATGGAACAGGGAGGCATTCCACCGACAACTAATCCTGCAAG
TCTTCTAAAGGAAGCAATCCATGTTATTAGTTGTGGTTATGAGGACAAGA
CTGAATGGGGCAAAGAGATTGGATGGATCTATGGTATGGCTACAATGGGA
GATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTATTGTCTACCCA
CTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTGCTTTTTGCCT
TCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGT
GGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAATACTGGAGATT
AGATGGAGTGGGGTTGGTATTGAGGACTGGTGGAGGAATGAACAGTTCTG
GGTCATTGGTGGAACATCAGCACATCTATTTGCTGTTTTCCAAGGTCTCT
TGAAAGTGCTTGCTGGGATTGATACCAACTTTACTGTCACTTCAAAGGCT
TCTGATGATGATGGAGATTTTGCAGAGCTTTATGTATTCAAATGGACATC
TCTTCTCATCCCTCCAACTACAGTCCTGATTGTGAACTTGGTGGGTATTG
TAGCTGGTGTATCATGGGCCATAAACAGTGGTTACCAATCATGGGGTCCA
CTCTTTGGCAAGCTATTCTTTGCCATATGGGTCATTGCCCATCTGTATCC
TTTCCTGAAAGGTCTGTTGGGTCGTCAAAACCGCACACCAACAATTGTCA
TTGTGTGGTCTATCCTACTTGCTTCCATTTTCTCCTTGCTGTGGGTGGCT
GTTGATCCCTTTACCTCCGATGAAACCAAAACCAATTCAAAACGGCCAAT
GTTGGCAACCAATTGCTAGTGCATGTTGGAAGATTAATTTGTGGCCCCAA
ATGCCATTTCTTCCCTCAATCCCCCCTCCATGTAAAATAAAAAAAAATTA
ATTTTCATGGGAAAAAGGATCGAAATTTAATTTTCTTTCTCCCTCCCGCC
TGGACAAAAAGGAAAATTGAATATAAACGGGATCTCTTTTTCCTTTTCCC
CGGTGAACACCAAACTAGGGAAAGAACTACAAGGGTTTTAAACAAAAACC
CCTTTTTTTTTGTAATTCTATTTTCTAAAAAATTTTATTTTCTTATAATA
TCCTTTTTTTATAACTAATCCCTCCATACCAGGGAGGATCTGGGGGGGTG
TGTGATGGCGCCCCC
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