DY270954

Overview
NameDY270954
Unique NameDY270954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3784 contig Ccv1_Contig3784:1..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY270954 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 8.778e-11
Identity = 54/210 (25.71%), Postives = 97/210 (46.19%), Query Frame = 3 
Query:  141 YNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVT------------SKASDDDGDFAEL----YVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINS--GYQSWGPLFGKLFFAIWVIAHLYPFLKGL 716
            ++G++K  +RLAY   ++  L SIP + YC LPA+CLL +  + P+     ++  ++    +++  + +    G  ++ W+  +  W I  TS+ LF++   +LK+L      F +             SK S  + D  +L    + F  + L IP T +++VNL  +   +     S   +   G    +    I V+    PFLKGL
Sbjct:  521 FHGKIKFRQRLAYFWALMC-LRSIPELIYCLLPAYCLLHDSALFPKGPCLCTIVTLVGMHCLYS--LWQFMSLGFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSGLFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGL 727
The following BLAST results are available for this feature:
BLAST of DY270954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CSLB5_ARATH8.778e-1125.71Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270954 ID=DY270954; Name=DY270954; organism=Citrus clementina; type=EST; length=1215bp
GCTACCTTCATGGAACAGGGAGGCATTCCACCGACAACTAATCCTGCAAG
TCTTCTAAAGGAAGCAATCCATGTTATTAGTTGTGGTTATGAGGACAAGA
CTGAATGGGGCAAAGAGATTGGATGGATCTATGGTATGGCTACAATGGGA
GATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTATTGTCTACCCA
CTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTGCTTTTTGCCT
TCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGT
GGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAATACTGGAGATT
AGATGGAGTGGGGTTGGTATTGAGGACTGGTGGAGGAATGAACAGTTCTG
GGTCATTGGTGGAACATCAGCACATCTATTTGCTGTTTTCCAAGGTCTCT
TGAAAGTGCTTGCTGGGATTGATACCAACTTTACTGTCACTTCAAAGGCT
TCTGATGATGATGGAGATTTTGCAGAGCTTTATGTATTCAAATGGACATC
TCTTCTCATCCCTCCAACTACAGTCCTGATTGTGAACTTGGTGGGTATTG
TAGCTGGTGTATCATGGGCCATAAACAGTGGTTACCAATCATGGGGTCCA
CTCTTTGGCAAGCTATTCTTTGCCATATGGGTCATTGCCCATCTGTATCC
TTTCCTGAAAGGTCTGTTGGGTCGTCAAAACCGCACACCAACAATTGTCA
TTGTGTGGTCTATCCTACTTGCTTCCATTTTCTCCTTGCTGTGGGTGGCT
GTTGATCCCTTTACCTCCGATGAAACCAAAACCAATTCAAAACGGCCAAT
GTTGGCAACCAATTGCTAGTGCATGTTGGAAGATTAATTTGTGGCCCCAA
ATGCCATTTCTTCCCTCAATCCCCCCTCCATGTAAAATAAAAAAAAATTA
ATTTTCATGGGAAAAAGGATCGAAATTTAATTTTCTTTCTCCCTCCCGCC
TGGACAAAAAGGAAAATTGAATATAAACGGGATCTCTTTTTCCTTTTCCC
CGGTGAACACCAAACTAGGGAAAGAACTACAAGGGTTTTAAACAAAAACC
CCTTTTTTTTTGTAATTCTATTTTCTAAAAAATTTTATTTTCTTATAATA
TCCTTTTTTTATAACTAATCCCTCCATACCAGGGAGGATCTGGGGGGGTG
TGTGATGGCGCCCCC
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