DY270986

Overview
NameDY270986
Unique NameDY270986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHM_HUMAN (Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 1.309e-14
Identity = 60/191 (31.41%), Postives = 84/191 (43.98%), Query Frame = 3
Query:   93 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 617
            N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   Q +   DC               KKP+                M C    A  K Q   PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E L++ +   A  IA+  K
Sbjct:   44 NNTVGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSK 234          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadB PE=3 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 1.709e-14
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 575
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L++
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLIE 195          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.709e-14
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 575
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L++
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLIE 195          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.709e-14
Identity = 63/226 (27.88%), Postives = 94/226 (41.59%), Query Frame = 3
Query:  171 DKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHG-------------------ADCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK-----KTAPNMPHHKHGLNVIEEG 764
            ++F EA ++    DD++ +++T +   F  G DI  F  +                      D   P                 + C  R+A     +GLPE+ LG+IPGFGGT RLPR++G   A+E +   K+  + +  K+G +DAVV  E L K +   A   AA ++ W     R  KL  L      L +  + AK     K   + P     L  IE G
Sbjct:   37 EEFSEALTKLQNTDDLRGVIVTSSKSTFIVGADITEFLTLFSDQEKTRSWVAKASRVFDQLEDLPVPTVGAVTGFALGGGCEALLACDYRVADTTATIGLPEVKLGLIPGFGGTMRLPRVIGPDNALEWITTGKNNKALDALKVGAVDAVVEPENLTKAALNLAKAAAAGQQDW--KAKRQPKLEPLKANDTELMMTLVTAKGMIAAKAGKHYPAPHKALEAIENG 260          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 60/225 (26.67%), Postives = 100/225 (44.44%), Query Frame = 3
Query:   93 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADCKK--------------------PIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 704
            ++G+A +    P  VN L    VA L +       + ++K ++L      F  G DI  F  +  A  +K                    P                 +    R+A+P  ++GLPE  LG++PGFGG+ RLPRL+G   A+E++   K +++++  K+GL+DAVV  E+L++ +          +  W    +R  KL       E LKL+ ++A
Sbjct:   14 DNGIAELVFNAPGSVNKLDTRTVASLGEALAVLEKQTELKGLLLRSTKAAFIVGADITEFLSLFAAPAEKLQEWLNFANAIFNRLEDLPVPTISAINGYALGGGCECILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALKVGLVDAVVAPEKLVEAALKMLQQAIEGKLDW--RAYRQPKL-------EPLKLSPIEA 229          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_PSYWF (Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp. (strain PRwf-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 58/193 (30.05%), Postives = 88/193 (45.60%), Query Frame = 3
Query:   72 RVTMEVGNDGVAIITLINPPVNALAIPIV---AGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQK---------------VHGA-----DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 569
            R+T+ + +DG+A     N   NA    +    A    +F+EA S     D+VK +++T + G F  G DI  F                 ++G      D   P                 + C  R+   K Q+GLPE  LG+ PGFGG+ R PR++G+  A+E++   K+    E  KLGL+DAVV  ++L
Sbjct:    7 RITVSLLDDGIA-----NMQFNAEGESVNKFDAETNKQFDEAVSALEKADNVKGLIVTSSKGVFIAGADITEFVSHFNKEAAEIEKWIVDINGVFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMGDKAQIGLPETQLGIFPGFGGSVRTPRVIGIDNAVELIATGKAQKPAEALKLGLVDAVVAQDDL 194          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 67/230 (29.13%), Postives = 102/230 (44.35%), Query Frame = 3
Query:   96 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADCKK--------------------PIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIR--SLHRTDKLGSLSEAR-EVLKLA 692
            DG+A +    P  +N L    VA L         +  +K ++L      F  G DI  F  +  +  +K                    P                 +    R+A+P  ++GLPE  LG++PGFGG+ RLPRL+G   A++++   K I +EE  K GLIDAVV  E+L       L+ +    LD  A R+P +    L+ T++  S S A+  V+K+A
Sbjct:   15 DGIAELVFNAPAAINKLDTKTVASLDKAIASLEQQTGLKGVLLRSEKTAFIVGADITEFLSLFDSPVEKLQEWLNFSNSIFNRIEDLPVPTISAINGYALGGGCECVLSTDFRVASPDIRIGLPETKLGIMPGFGGSVRLPRLIGTDNALDIIAAGKDIGAEEALKNGLIDAVVPKEKLVDSAVSMLEQAIAGNLDWKAARQPKLEPLKLNETERGMSFSVAKGMVMKVA 244          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHM_PONAB (Enoyl-CoA hydratase, mitochondrial OS=Pongo abelii GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 60/191 (31.41%), Postives = 84/191 (43.98%), Query Frame = 3
Query:   93 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 617
            N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   Q +   DC               KKP+                M C    A  K Q   PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E L++ +   A  IA+  K
Sbjct:   44 NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHWDHLTQIKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRTVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSK 234          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 59/191 (30.89%), Postives = 84/191 (43.98%), Query Frame = 3
Query:   93 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 617
            N  V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   Q +   +C               KKP+                M C    A  K Q G PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E +++ +   A  IA+  K
Sbjct:   44 NSNVGLIQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQNCYSGGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETVVEEAIQCAEKIASNSK 234          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_YERPY (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.916e-14
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            RIA+P+ ++GLPE  LG++PGFGG+ RLPRL+G   A+E++   K +T+ +  K+GL+DAVV  E+L       LK +    LD  A R+P +  L
Sbjct:  127 RIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGKLDWQAARRPKLEPL 222          
The following BLAST results are available for this feature:
BLAST of DY270986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ECHM_HUMAN1.309e-1431.41Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens... [more]
FADB_SHIFL1.709e-1429.28Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_SHIF81.709e-1429.28Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_IDILO1.709e-1427.88Fatty acid oxidation complex subunit alpha OS=Idio... [more]
FADB_SERP52.232e-1426.67Fatty acid oxidation complex subunit alpha OS=Serr... [more]
FADB_PSYWF2.232e-1430.05Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADB_PHOLL2.232e-1429.13Fatty acid oxidation complex subunit alpha OS=Phot... [more]
ECHM_PONAB2.232e-1431.41Enoyl-CoA hydratase, mitochondrial OS=Pongo abelii... [more]
ECHM_BOVIN2.232e-1430.89Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]
FADB_YERPY2.916e-1443.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270986 ID=DY270986; Name=DY270986; organism=Citrus clementina; type=EST; length=1215bp
TTCGGATTGATATTTAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAAGAGAGGTGTTGAAACTTGCTAGACTACA
AGCCAAGAAGACTGCCCCAAATATGCCTCACCACAAGCATGGCCTGAATG
TGATTGAGGAGGGTACCGTTCATGAAGGATATAATGGCGTTTTGAAAGGA
GGCCCAAGTTTTCAGGGAGTTAGTCAAGGTTAAACCCCTTCCAAAAGGTC
TTGTTCTGTCCTTTTTCGCCCAACCCGGAAACCTCCAAGGGTGCCCCATA
TGTAAACTGAAAATTGGTCTCCCAAACCAATGGGGTGTAAAAAAAAACTT
GCCTGGGACTTAAGGCCGCGTCCTAGGGGGTTCTGGGCCATACCATTTCC
GCACCAAACCTTGACAATAATCTAATGTTTTCTCCTAATGGTAATTTTTT
CTTTAATAAATCTTTCTACCAATGAGTAAAACAAAATTAAAGCACATCAA
CAGTTTCCCGAGCCCTTGTCTACACCAATAACAAAATCATCAAACCGCAT
CTAAATACCTAACAACCAATCCCTCACCATATAATATTTTTTAAACAACT
GAGACTACCATCTAT
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