DY270986

Overview
NameDY270986
Unique NameDY270986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.940e-12
Identity = 61/207 (29.47%), Postives = 83/207 (40.10%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADCKKPIXXXXXXXXXXXXXXXXM--------------GCHA------RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 623
            +P + +E+  D +A +    P  VN      +A L    +      D KA VLT     F  G DI  F  +   +  K +                               GC A      R+A    ++GLPE  LG+IPGFGGT RLPRL+G   A+E +   K    E+  K+G IDAVV  E L   +     D  A +  W
Sbjct:    5 SPTIQVELTADKIARLCFNAPGSVNKFDRETLASLNAALD-VLKDSDAKAAVLTSGKDTFIVGADITEFLALFAEEDAKLMEWIAQANVVFNKLEDLPFPTVSAIKGFALGGGCEAILATDFRVADTSAKIGLPETKLGLIPGFGGTVRLPRLIGADNALEWITTGKDQRPEDALKVGAIDAVVAPENLEAAAIQMLNDALAGKLDW 210          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.769e-11
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 725
            R+A    ++GLPE  LG+IPGFGGT RLPR+VG   A+E +   K    E    +G IDA+V  E+L   +     D  A +  W     R  KL  L+    + KL  + +  TA  M
Sbjct:  127 RVADTTARIGLPETKLGIIPGFGGTVRLPRVVGTDNALEWITSGKDQRPEAALNVGAIDALVAPEQLQSAALKMLKDAIAEKLDW--QTRRAKKLAPLT----LPKLEAMMSFATAKGM 239          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_COLP3 (Fatty acid oxidation complex subunit alpha OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.769e-11
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  354 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            + C  R+AA    +GLPE+ LG++PGFGGT RLPRL+G   A   M   K+         G IDAVV  E L       LK++    LD  A+R+P + +L
Sbjct:  122 LACDYRVAATTASIGLPEVKLGLMPGFGGTVRLPRLIGFDNAATWMSTGKAFKPAAALAQGAIDAVVEPENLQAAAISMLKLAIDGKLDWRAKRQPKLEAL 222          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.940e-11
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 623
            RIA    ++GLPE  LG+IPGFGGT RLPR++G   A+E +   K    E   K+G IDAVV  E+L   +     D    +  W
Sbjct:  127 RIADTTARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITSGKDQRPEAALKVGAIDAVVAPEQLKPAALKMLKDALIEKLDW 211          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADB_PSEMY (Fatty acid oxidation complex subunit alpha OS=Pseudomonas mendocina (strain ymp) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.146e-11
Identity = 42/138 (30.43%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEE 761
            R+ +   ++GLPE+ LG+ PGFGGT RLPR++G   A+E +   K   + +  K+G +DAVV        + +L+K +    LD  A+R+P +  L    KL ++ +           A +  PN P     +  I++
Sbjct:  128 RVMSETAKIGLPEVKLGIYPGFGGTVRLPRVIGTDNAVEWIASGKENKAADALKVGAVDAVVAPAKLKEAALDLVKRAISGELDYKAKRQPKLEKL----KLNAIEQMMCFETAKGFVAGQAGPNYPAPVEAIKTIQK 261          
The following BLAST results are available for this feature:
BLAST of DY270986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FADB_SHEAM7.940e-1229.47Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEPW1.769e-1136.97Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_COLP31.769e-1140.59Fatty acid oxidation complex subunit alpha OS=Colw... [more]
FADB_SHEPA3.940e-1142.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSEMY5.146e-1130.43Fatty acid oxidation complex subunit alpha OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270986 ID=DY270986; Name=DY270986; organism=Citrus clementina; type=EST; length=1215bp
TTCGGATTGATATTTAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAAGAGAGGTGTTGAAACTTGCTAGACTACA
AGCCAAGAAGACTGCCCCAAATATGCCTCACCACAAGCATGGCCTGAATG
TGATTGAGGAGGGTACCGTTCATGAAGGATATAATGGCGTTTTGAAAGGA
GGCCCAAGTTTTCAGGGAGTTAGTCAAGGTTAAACCCCTTCCAAAAGGTC
TTGTTCTGTCCTTTTTCGCCCAACCCGGAAACCTCCAAGGGTGCCCCATA
TGTAAACTGAAAATTGGTCTCCCAAACCAATGGGGTGTAAAAAAAAACTT
GCCTGGGACTTAAGGCCGCGTCCTAGGGGGTTCTGGGCCATACCATTTCC
GCACCAAACCTTGACAATAATCTAATGTTTTCTCCTAATGGTAATTTTTT
CTTTAATAAATCTTTCTACCAATGAGTAAAACAAAATTAAAGCACATCAA
CAGTTTCCCGAGCCCTTGTCTACACCAATAACAAAATCATCAAACCGCAT
CTAAATACCTAACAACCAATCCCTCACCATATAATATTTTTTAAACAACT
GAGACTACCATCTAT
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