DY271000

Overview
NameDY271000
Unique NameDY271000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1320
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.472e-16
Identity = 37/111 (33.33%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ++ V +YG+S +S ++AI++P+ ++   WA     + D K +C+N    + +L ++ +  K+  L GFE  KA+HL P  F  + +LLTP++K KR ++ K+++D I  +Y
Sbjct:  559 VEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLY 669          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.250e-15
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   15 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF---ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKSANR 392
            L++++        V+VYG+S  SFLV +V P+ + +++  A      D  +     K+KE    IL      A E KL GFE +K +++E  PF  E +LLTP++K KRPQL + YQ +ID +Y    R
Sbjct:  534 LESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLYAEYKR 662          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.128e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ID++  Y NS+ S+++  V PN+  L   A   G NG ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 IDNICAYANSYHSYVIGFVVPNQKELTELARTKGFNGTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.365e-12
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   I+ MY
Sbjct:  557 IDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.783e-12
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   ++ MY
Sbjct:  598 IDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.783e-12
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   I+ MY
Sbjct:  598 IDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGTWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.783e-12
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            +D++  Y NS+ S+++  V PN+  L   A + G+ G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 VDNICAYANSYHSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.783e-12
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            +D++  Y NS+ S+++  V PN+  L   A + G+ G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 VDNICAYANSYHSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of DY271000 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.041e-12
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 3
Query:   45 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 377
            ID++  Y NS+ S+++  V PN+  L   A   G  G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 IDNICAYANSYHSYVIGFVVPNQKELTELARTKGFKGTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
The following BLAST results are available for this feature:
BLAST of DY271000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FCSB_DICDI3.472e-1633.33Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
FCSA_DICDI2.250e-1536.43Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL3_RAT6.128e-1335.14Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL4_RAT1.365e-1235.14Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE1.783e-1234.23Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL4_HUMAN1.783e-1235.14Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
ACSL3_PONAB1.783e-1233.33Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN1.783e-1233.33Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_MOUSE3.041e-1234.23Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YI10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271000 ID=DY271000; Name=DY271000; organism=Citrus clementina; type=EST; length=1320bp
GTTGCTGTTGACCTTTGAAGAATATTTATGCTCTTGTATCTGCTATTGAT
TCGGTATGGGTGTATGGGAACAGCTTTGAGTCCTTCCTTGTTGCCATTGT
CAACCCCAACAAGGACGCACTTGAAAGATGGGCAGCTGAAAATGGTGTAA
ATGGAGACTTCAAGTCCCTCTGTGAAAATCCCAAGGCAAAAGAATTCATA
CTCGGAGAGCTCTCAAGAGTTGCTAAAGAGAAAAAGTTGAAAGGTTTTGA
ATTCATTAAAGCTGTTCATCTTGAACCTGTCCCATTCGACATTGAACGTG
ATCTTCTTACTCCAACATATAAGAAGAAAAGGCCCCAATTGCTCAAACAT
TATCAGGATGTAATCGACAACATGTACAAGAGTGCAAACAGGCCTAGTTC
TTGAAAGAAAATAATTTTTGGAGTATGCTTCTGTGTGAAAAAGTTTCTTT
TTTCATTCAAGTCCTTGTGCTTCTTGTCAGACTGTACATATCGATATTTA
TTCAGTCGATAAATTTCAATTAATTTGTACTGCTTGAATTGATATGTTCC
CGTAATTAAACATGATAAATGACATTTGCTTTTCTGTTCAAACAAAATTA
AGACATAAATCTATAATTATATCTAAAAGAACAGAACAAAAAAAACAAAA
ACATCGAAAAAACTCACCATTTTCTGTCACGAGTGGGCGCACCCACACGA
TAAGCTTTTTCTTTGATTCTCTGTTGCAGGCTTACCTCTTCCTCTGCGTT
TAACTTAATTTCTTTCTTATACAGCCAACCTCTCTTTCACTCTCACATAC
AACAAATGGACTGGTCACAATAGACACCGCGCCGCCAGCCGCTCGGACCC
TCCCCTCACCGCCCCCTCATATGACCCACCCCCACTCTAATATCACCATC
TCTTTTTCTCAACTATTTCTATCTCACTACTTGATTCACACTTATACTAC
TCATTCCTCAAAAACTAATATACTTTTTTCAGTAATGGCCCAACCATTTC
TTTTCCACACTCATGATCTGCACATTAAATTTGAAATACTCGATCTGTCT
CTCTTAGTTATCTTTATTCAGGGTTCCGTCTTGCCATGGTCCAGCTACAC
TATGCTCTTAAATACAGGTTAGATTATATAGCTAAGTTGGGAACATTATA
CAACATAATGCATTTACAATATCATAATGCTAATCATTTGTTTGAACATT
ATTATCCTAATAAGGTTTGCCGCTATATTGTGTGAACGTTTGATCTCGCA
GGACTCCACCGACTCACTATACTATTACCAACCTCGACATTCTAAATATA
CTTGCATTCTAACACCCTCA
back to top