DY271051

Overview
NameDY271051
Unique NameDY271051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            G I D  FKTFGCGSAIASSS  T  VKG  ++E   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K+
Sbjct:  102 GVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQ 176          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.813e-16
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ET  I+DA F+TFGCGSAIASSS  TE VKG  + E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 243
            D ET  I+DA F+TFGCGSAIASSS  TE VKG  + + L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGEELR 127          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.236e-13
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 225
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.236e-13
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 225
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            E   I D  FKTFGCGSAIA SS+ TE VKGK IQ  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K+
Sbjct:   49 ENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQ 126          
BLAST of DY271051 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ++  I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   46 DPQSEIIEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
The following BLAST results are available for this feature:
BLAST of DY271051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_SCHPO2.231e-2169.33Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_AZOVI4.813e-1654.43Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_AZOCH4.505e-1448.78Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_ANASP2.236e-1348.65Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ2.236e-1348.65Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_AQUAE3.229e-1250.00NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]
NIFU_KLEPN9.394e-1244.30Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271051 ID=DY271051; Name=DY271051; organism=Citrus clementina; type=EST; length=941bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGCTG
TGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGGGTGAAAGGGA
AGCAGATACAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACCAGCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAAATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGTGTGGTGGAGGGGGTAA
AGTTTATGGTTATTAGTAAGAACTGTGTATGAATAATGATCCAAGGACCT
GCAGTTTTGCACATAAGTAATTGTACTTTGCGTAACTGAACAAATGACAT
ATGATTCATTGTAAAACTATTTTGTTAAGTGAATGAAATAAAGGGTTTAA
ATTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
CCCCCCTTTTTTTGTAAAAATTTGGTATTTTAAAAAAACCTTCCCTTATT
AATTTTTTGGCAAGAAAAGGGTCACCTTTCGGTTCAAAAAAAAAAAACAT
TTTTTTTTCCCCCCCCCGGAAAATCCCCCCCAAAAGATGGAGTCCTATAA
AAGGATACAGATACTGTTTCCCCGCGGCAGCTCCTGGCCCCCTTGTCCTT
CAACATCTCGACAAATTTTCAATTCTAACTCAAAAAAATAAAAAATATAT
AACATATCACTCTATAAAAAAAACCTCCACTGCAGCCCCACAATAACAAG
ATAAGAGAGTTCAAAACATTTTCTCTCACTGTTTCTTCACA
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