DY271057

Overview
NameDY271057
Unique NameDY271057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.484e-29
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  197 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 625
            R+ +EL+ L K+PP          +M   +A I+G   SPY GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K +R  + + A+ WT+K+A+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.939e-29
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = 2
Query:  197 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + +TAR WT+ +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.532e-29
Identity = 60/149 (40.27%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  176 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE-----TTARSW 607
            + T A +R++++ K L  D P   S  P  +++  W A I GPP++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE     T   SW
Sbjct:    1 MSTAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 7.367e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  185 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 7.367e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  185 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 7.367e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  185 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.389e-27
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  188 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 589
            A KR+LKEL+ L KD P    AGP +E+ +F W   I GPPD+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ +R ++E
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.042e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:  191 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            + R+ +EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K ++  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.042e-27
Identity = 64/152 (42.11%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  185 MASKRILKELKDLQKDPPT---SCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 628
            MA  RI +E K++ +       S     V +     +  I GPPD+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K   + +  TA+ WT  YA G
Sbjct:    4 MAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of DY271057 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.280e-27
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2
Query:  191 SKRILKELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 622
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR  T+KYA
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
The following BLAST results are available for this feature:
BLAST of DY271057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2T_XENLA1.484e-2944.90Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC27_ARATH1.939e-2945.83Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_CRYNE2.532e-2940.27Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2K_MOUSE7.367e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN7.367e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN7.367e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC7_YEAST1.389e-2740.54Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2T_BOVIN4.042e-2739.19Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBCD4_DROME4.042e-2742.11Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC37_ARATH5.280e-2744.59Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271057 ID=DY271057; Name=DY271057; organism=Citrus clementina; type=EST; length=1247bp
ATCCCGATTCCCCATAGTTCCTCTTGCATTTAATTTTTCTCCTGCTTCCA
TTTTTCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTTTGTTTCTAA
TTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATATTGCAAGGCCAA
ATCAGGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGTCGAAACGGA
TCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACATCATGCAGT
GCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGACAATCATGGG
TCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTACCATCCATT
TTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTCAGGACAAAG
GTATTTCATCCTAACATAAATAGCAATGGGAGCATTTGCCTTGACATCTT
GAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGTTGCTATCAA
TCTGTTCATTATTGACGGATCCAAATCCCGATGATCCGTTGGTACCAGAA
ATTGCTCACATGTACAAGACCGACAGGAACAAGTACGAGACAACTGCAAG
GAGCTGGACCCAGAAATATGCCATGGGCTAAACCTGGGTTATGGTGTGTG
AGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATGTATGAATAT
TCTGTCTGTTCAATCCCAAAAAAGTGGACCATAAAAAAAGTCCACTACAT
CCCCCGAATTGGAAAGGAGAAACGGTTGCTTCTTAAATGTGGAAGGATAA
TGTCACATTGGTCAATCAAATGGGTTCCGGAAAAAAAAAAAAAAAAAAAA
AAAAAAAACCCAACTTTTCCTGGACAAATTGGGGATTAAAAAAAAAAAAA
TTGCCTACAAATTTTTTTTCAAAAAAAAGGGCTTATACATCAAAAAAAAT
CTGATTTTTCCAATCCACGTAAAATCCCCTTTTATGAATTTAAAATCATG
GACCAAAAACCCGTTTCCCTAGGCGCCCCTGCCCCCCCCAAACCCCATAA
CCCCTACCGTTTCCCTACTCTAATAAAATAAATAAATAACTCTCCGCTCT
TAGAATAATAGATTTCACCACATACCTCATATTAAGGATCCAACTCACAT
CTAGCACCCATCAGTTGCTCATTACTAATATGACTGTAAACTTTTCATAA
TAACTAAGCTCCATCGGCCTTCGTACTACCTTCACGGATATACGTAT
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