DY271058

Overview
NameDY271058
Unique NameDY271058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.275e-49
Identity = 98/224 (43.75%), Postives = 148/224 (66.07%), Query Frame = 2
Query:  257 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACI 895
            LKN++DAQY+G+IGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S +I+YGSGS+SG+ SQ                       F EAT++  + F+ A+FDGI+G+G+  I+V + +PV+DN+++Q LV + +FSF+LNRDP+ + GGE++ GG D K + G+ +Y+ VT+K + Q +  +  +  E++     +GGC  I
Sbjct:   71 LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNELT---LCKGGCEAI 291          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.710e-49
Identity = 103/237 (43.46%), Postives = 145/237 (61.18%), Query Frame = 2
Query:  200 AGVSGVHHRLG-DSDEDILP--LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNF-GKNINWEISPQVFGRGGCACI 895
            AG + + H  G  S     P  LKN+MDAQY+GEIG+G+P Q F+V+FDTGSSNLW+PS  C F+ I+C  H +Y   KS+TY + G    I YGSGS+SG+ SQ              F EA ++  + F+ A+FDGI+G+ +  I+V    PV+D M+ Q  V + VFSF+LNR+PD E GGE++ GG DPK + G   YVPVT++ + Q +  G +I  +++     + GC  I
Sbjct:   46 AGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVPPVFDMMMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQLT---LCKDGCEAI 279          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.845e-49
Identity = 98/221 (44.34%), Postives = 146/221 (66.06%), Query Frame = 2
Query:  257 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACI 895
            LKN++DAQY+GEIGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S +I+YGSGS+SG+ SQ                    F EAT++  + F+ A+FDGI+G+G+  I+V   +PV+DN+++Q LV + +FSF+LNRDP  + GGE++ GG D + + G+ +Y+ VT+K + Q +  +  +  E++     +GGC  I
Sbjct:   71 LKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSELT---LCKGGCEAI 288          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 6.328e-49
Identity = 92/190 (48.42%), Postives = 127/190 (66.84%), Query Frame = 2
Query:  257 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQ 823
            LKN++DAQY+GEIG+G+PPQ F+V+FDTGSSNLWVPS  C    I+C  H +Y S KS+TY + G +  I YGSGS+SG+ SQ              F EA ++  + F+ A+FDGI+G+ +  I+V    PV+DN++ Q  V + VFSF+LNR+PD E GGE++ GG DPK + G   YV VT++ + Q
Sbjct:   68 LKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVAPVFDNIMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVNVTRQAYWQ 257          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.410e-48
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 2
Query:  251 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQ 823
            +PL  FM+ QYFG IG+G+PPQNF+V+FDTGSSNLWVPS++C +FS++C+FH R+  + S+++   G    I YG+G +SG  SQ              F EA  E SL F LA FDGI+GLGF  +AVG   P  D MVEQGL+ + VFSF+LNRD +  +GGE+V GG DP  +    T++PVT   + Q
Sbjct:   63 VPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILGLGFPTLAVGGVQPPLDAMVEQGLLEKPVFSFYLNRDSEGSDGGELVLGGSDPAHYVPPLTFIPVTIPAYWQ 254          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.410e-48
Identity = 106/236 (44.92%), Postives = 141/236 (59.75%), Query Frame = 2
Query:  254 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACICGPQEHSLQPRSNPRLDLKSI 958
            PL N+MD QYFGEI IG+PPQNF+VIFDTGSSNLWVPS  C  S +C  H+R++ + S+TY   G +  + YG+GS+SG                  F E+  E   TF+ A FDGI+GLG+  IAVG   PV+DNM+ Q LV   +FS +++RDP++  GGE+VFGG D   F G+  +VPVT +G+ Q       IN E+   VF  GGC  I       +   S+  + L+SI
Sbjct:   65 PLINYMDVQYFGEISIGTPPQNFTVIFDTGSSNLWVPSVYC-ISPACAQHNRFQPQLSSTYESNGNNFSLQYGTGSLSGVIGIDSVTVEGILVQNQQFGESVSEPGSTFVDASFDGILGLGYPSIAVGGCTPVFDNMIAQNLVELPMFSVYMSRDPNSPVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNIQINGEV---VFCSGGCQAIVDTGTSMITGPSSDIVQLQSI 296          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.559e-47
Identity = 99/215 (46.05%), Postives = 133/215 (61.86%), Query Frame = 2
Query:  254 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACI 895
            PL N+MD +YFGEI +G+PPQNF+VIFDTGSSNLWVPS  C  S +C  H R++ + S+TY   G +  + YG+GS+SG                  F E+  E   TF+ A FDGI+GLG+  IAVGD  PV+DNM+ Q LV   +FS +++R+P++  GGE+VFGG D   F G+  +VPVT +G+ Q       IN E+   +F  GGC  I
Sbjct:   65 PLINYMDVEYFGEISVGTPPQNFTVIFDTGSSNLWVPSVYC-ISQACAQHDRFQPQLSSTYESNGNNFSLQYGTGSLSGVIGIDAVTVEGILVQNQQFGESVSEPGSTFVDAEFDGILGLGYPSIAVGDCTPVFDNMIAQNLVELPMFSVYMSRNPNSAVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQINGEV---LFCSGGCQAI 275          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.010e-46
Identity = 99/194 (51.03%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  251 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNF 832
            +P+ NFM+AQYF EI IG+PPQ F V+ DTGSSNLWVPSS+C  SI+CY H++Y+S +S+TY + G S +I YGSGS+SGF SQ              F EAT E  L F   RFDGI+GLG+  IAV    P +  MVEQ LV E VFSF+L  D D E   E+VFGGV+   + GK T +P+ +K + + +F
Sbjct:   75 VPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQCG-SIACYLHNKYESSESSTYKKNGTSFKIEYGSGSLSGFVSQDRMTIGDITINDQLFAEATSEPGLAFAFGRFDGILGLGYDRIAVNGITPPFYKMVEQKLVDEPVFSFYL-ADQDGE--SEVVFGGVNKDRYTGKITTIPLRRKAYWEVDF 264          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.319e-46
Identity = 96/224 (42.86%), Postives = 143/224 (63.84%), Query Frame = 2
Query:  257 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACI 895
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSGS+SG+ SQ                       F EA ++  + F+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + VFSF+LNRDP A+ GGE++ GG D K ++G   +  VT++ + Q +  + ++    S     +GGC  I
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVG---SSLTVCKGGCEAI 271          
BLAST of DY271058 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.014e-46
Identity = 96/224 (42.86%), Postives = 141/224 (62.95%), Query Frame = 2
Query:  257 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXX---------FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKPFKGKHTYVPVTKKGFCQFNFGK-NINWEISPQVFGRGGCACI 895
            L N+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSGS+SG+ SQ                       F EA ++  + F+ A+FDGI+G+ +  I+V + +PV+DN++ Q LV + VFSF+LNRDP A+ G E++ GG D K ++G  TY  VT++ + Q +  + ++    S     +GGC  I
Sbjct:   46 LTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELMLGGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVG---SSLTVCKGGCEAI 266          
The following BLAST results are available for this feature:
BLAST of DY271058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
CATD_MOUSE1.275e-4943.75Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CLUHA3.710e-4943.46Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_RAT4.845e-4944.34Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_CHIHA6.328e-4948.42Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
NAPSA_MOUSE1.410e-4849.48Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATEB_XENLA1.410e-4844.92Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATEA_XENLA1.559e-4746.05Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CARP_NEUCR1.010e-4651.03Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
CATD_BOVIN1.319e-4642.86Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_SHEEP5.014e-4642.86Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271058 ID=DY271058; Name=DY271058; organism=Citrus clementina; type=EST; length=1230bp
CAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACTTCTTCGGT
CAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCC
TCTAATGGCTTACGGAGAATTGGCTTGAAGAAGCGGCGTCTAGATCTTCA
TAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATATGGGGGGAG
CAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATGAAGATATT
TTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAGATTGGTAT
TGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGGCAGTTCCA
ATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCTGCTATTTC
CATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAAATTGGAAA
ATCCTGTGAAATAAACTATGGATCTGGATCAATTTCTGGCTTCTTCAGTC
AAGACAATGTTGAAGTTGGGGATGTTGTTGTCAAGGATCAGGTTTTCATT
GAGGCTACACGAGAAGGGAGTCTCACTTTTCTATTGGCAAGGTTTGATGG
AATAATAGGGCTTGGGTTCCGGGAAATTGCAGTTGGGGATGCTGTGCCTG
TGTGGGACAATATGGTTGAGCAGGGCCTTGTAAGCGAGGAGGTCTTCTCA
TTCTGGCTCAACAGGGATCCAGACGCTGAAGAGGGTGGAGAGATTGTTTT
TGGTGGTGTTGATCCAAAGCCCTTTAAAGGGAAGCATACCTATGTTCCTG
TTACTAAAAAAGGCTTCTGCCAGTTCAATTTTGGGAAAAATATTAATTGG
GAAATCAGTCCACAGGTGTTTGGGAGGGGGGGGTGTGCCTGCATTTGTGG
ACCTCAGGAACACTCCTTACAACCCCGGTCCAACCCCCGGTTGGACCTGA
AATCCATTCCAGCCATTGGGTGGGGAAGGGAGTTTTTTAGTGGCGGGAGT
GAAAACTATTTTTTTTCCCCATATGGGGGGATTTACTTAAGGAAACCCTC
ATATTATACCGGGGTCTTCTACCCTGAAAAAATTAATGTCTACACAAATA
GGGTTTTTTATGCTCTTTCCAGGGGGTCCCCTAAATTGTTTGGCCTATAA
GGGGGATCAACAGAAACCGGCGGCGTTTTCAACGAGAGCAAAAATCTTTA
TTCCAACCCGCCGGGGCATAATGTTGTGGT
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