DY271072

Overview
NameDY271072
Unique NameDY271072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1094
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271072 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.794e-13
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  310 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 459
            K H++++F+GHVDAGKST GG IL+L+G VD RT++KYE+EAKD  R+ W
Sbjct:  290 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGW 339
[Close]
BLAST of DY271072 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.225e-13
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  241 KVKHKEVSAVEDAES------QQETEGNN---------KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 459
            K+K KE  A  +A        +QE E +          K H++++F+GHVDAGKST GG IL+++G VD RT++KYE+EAKD  ++ W
Sbjct:  197 KLKIKEEQAAANASGADSLIKEQEEEVDEGVVNDMFGGKDHMSIIFMGHVDAGKSTMGGNILYMTGSVDKRTVEKYEREAKDAGKQGW 284
[Close]
BLAST of DY271072 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.062e-12
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:  253 KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 459
            KE     D E  ++  G  K H++++F+GHVDAGKST GG +L+L+G VD RT++KYE+EAK+  R+ W
Sbjct:  254 KEQEDEVDEEVVKDMFGG-KDHVSIIFMGHVDAGKSTMGGNLLYLTGSVDKRTVEKYEREAKEAGRQGW 321
[Close]
BLAST of DY271072 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.387e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  304 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 459
            +++ HLN+VF+GHVDAGKST  G I+ L+GQVD  T+ KYE+EAK+  RE W
Sbjct:  113 DSREHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGW 164
The following BLAST results are available for this feature:
BLAST of DY271072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERF3_CANAL2.794e-1362.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO6.225e-1343.18Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA1.062e-1249.28Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DICDI1.387e-1259.62Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271072 ID=DY271072; Name=DY271072; organism=Citrus clementina; type=EST; length=1094bp
CTCGCTTCTTTCACTCGATTAAGGAGGGGAAAAAAAAGAGAAAGAAGAGA
AACCCTAGGTGCCTTCATCACTATGGATATTGAGGAGGATATCCGCTCAT
TACAGCTTGACTCCGCAGAAGAGAATAATGGGGTGGTCAATCCTGGAGAT
GCAAGGCCAGAAGAAGTTGAGGTGGTGGATAAGATGGAGGAAGATTCAGA
GGAGGTGCAAGCAGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAAC
ACAAGGAAGTATCTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAA
GGAAATAATAAGCGACACTTGAATGTTGTATTTATTGGTCATGTTGATGC
TGGAAAGTCTACCACTGGAGGCCAGATACTTTTTCTTAGTGGCCAGGTCG
ATGACCGTACAATTCAAAAATATGAGAAAGAAGCAAAGGATAAAAGTAGA
GAAAGCTGGTGAGACTTCATTTTGGTTAATTTTACTACAGTTCCACTGCT
GGGGAGCATACAGGCAGCAAAATCGCAGAAGGCTATACTTTCTAGTATCA
TTTTATAAATTGGGAAGTTGATTTGCACCTTGTTTTTGGGGCCAACACTG
GAATATTATTAGGTTACATAATTAAAGAGTTTTTCTTTGATTTTCCCCTG
CATCAATTTAATCCTTTGTCCTTTTCCTGGCAGTAACAAGTACACCCACT
GGATGAACATTTTTAAACAGCATTTTTTCCGGCGGGAAAAAATTTTCTTT
ACCTATTTCCCTATGTACTAAAAACCATAACATTCACACTTTTCGGGAGT
TTCGGAAAAAAAAAAAAAAAAAAAAAAAAACCCCACCCTTTCTGTGTCCA
AAGTTGGGCTTTTTAAAAAAAACTCTGGTTTTTCATTTTGTTGGCCCGCA
CAAGGGCGATCTACCACATCAAAATAAATTCTATTTTTTTTTGCCTCCCC
CTTGATATCCAACCCTATTCTTATTTCTCATTTTTTATTGTTCGCTAGGT
GTTTTTGCGGGTGGGGGCAGTTCTCTCTCTGTCTTACTATTATGTATCAG
ATCGTTAGCTTTTTTTGAAACTTTTAATTGTTATTTTTATTCTT
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