DY271079

Overview
NameDY271079
Unique NameDY271079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.313e-19
Identity = 57/139 (41.01%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            K LT   +  +L + LKRF      K+ K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L6_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.153e-19
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            K LT   +  +L + LKRF      K+ K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ +E
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGSE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L3_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 3 OS=Homo sapiens GN=USP17L3 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.729e-19
Identity = 57/137 (41.61%), Postives = 72/137 (52.55%), Query Frame = 3
Query:    9 LTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT   +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  267 LTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L8_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8 OS=Homo sapiens GN=USP17L8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.340e-18
Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 3
Query:    9 LTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   G+Y  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  267 LTLHTSAKVLILVLKRFCDVTGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHNGYYFSYVKAQEGQWYKMDDAEVTACSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L4_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4 OS=Homo sapiens GN=USP17L4 PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 3.340e-18
Identity = 56/137 (40.88%), Postives = 72/137 (52.55%), Query Frame = 3
Query:    9 LTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   G+Y  YVK   G WY++DD +VT   +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  267 LTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L7_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7 OS=Homo sapiens GN=USP17L7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.362e-18
Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            K LT   +  +L + LKRF      KL K V +P+  D+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBPW_MOUSE (Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus musculus GN=Dub1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.697e-18
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLY 332
            K L    AP +L + L RF +    KL+++V++PE LDL PY+S+       Y LYAV+VH    + S  GHY C VK   G WY++DD KVT  D+  VL++ AY+L Y
Sbjct:  238 KTLHVHIAPKVLMVVLNRFSAFTGNKLDRKVSYPEFLDLKPYLSEPTGGPLPYALYAVLVHDGATSHS--GHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFY 345          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L1_HUMAN (Putative ubiquitin carboxyl-terminal hydrolase 17-like protein 1 OS=Homo sapiens GN=USP17L1P PE=5 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.269e-17
Identity = 56/137 (40.88%), Postives = 71/137 (51.82%), Query Frame = 3
Query:    9 LTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK     WY++DD +VT   +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  267 LTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP23_ARATH (Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.165e-17
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 338
            K+LT  +AP +LT+ LKRF++ R  K++++V F   +D+ P++S   +    Y LY V+VH     +S  GHY C+V+   G WY +DD +V  V  + V +Q AYML Y R
Sbjct:  300 KQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDFTSAIDMKPFVSGPHEGNLKYTLYGVLVHYG--RSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVR 409          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP25_ARATH (Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.823e-17
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGG-DRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS 356
            K+++  +APNIL I LKRF     GK++K ++F E L LS +MS    D    YKL+ ++VH      S  GHY  YVKD  G WY  +D  V+   L+EVLS+ AY+L ++R + RP+
Sbjct:  224 KQMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPES--GHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPA 340          
The following BLAST results are available for this feature:
BLAST of DY271079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
U17L5_HUMAN2.313e-1941.01Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L6_HUMAN5.153e-1940.29Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L3_HUMAN6.729e-1941.61Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L8_HUMAN3.340e-1840.88Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
U17L4_HUMAN3.340e-1840.88Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
U17L7_HUMAN4.362e-1840.29Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBPW_MOUSE5.697e-1843.64Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus... [more]
U17L1_HUMAN1.269e-1740.88Putative ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBP23_ARATH2.165e-1740.18Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabid... [more]
UBP25_ARATH4.823e-1742.86Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271079 ID=DY271079; Name=DY271079; organism=Citrus clementina; type=EST; length=1218bp
GGAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTA
AAAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTT
TCCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTA
CAGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAAT
GCCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACA
CTGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGG
TACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGA
CCTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCC
CAGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTA
CCATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGAT
GACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGC
AATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACA
ATATAGAGTCAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGTGG
ATACGGGAAATGCTCCGTCAAGTTCGGGGGATCGGCAGGACTTCCTCTAT
TGGCATGTAAAATTGTCTGGAGCCCAAGAAAAGGATTCAAGATGATATGA
ATATTGATGACCCTGAGACATCCCTTATCGGTCCCTAAGGGGGGCCCCTG
GTCCTGGTTAGTGAATCCAAAAGCCGTGGCTAAAAAAACCCAAAAGGTAT
GAATATAAGTTAATCCTGAACCAAGGTCCCCTTGGCGGCAAGGGAAATTA
AAAGTTTGGGGGCGAATTTTGGCCCTTGTCCCAAGGGAAAAATCCTTCGG
CCCCACCGGGTAAAATGTGGAAACATGGAAACCCCTTTTTTAACGGAGTG
GGGGGAAGGAAGAGAAAAGGGGTTTCCCAAAGAAAAGGGGAAAAAAAAAA
AAAGAAAAAATTCCCCACAAAAAACGGGGGGGGGGGGGGGGGGCGTTTTT
TTCCCCCCCAATTTTTTTTTTTTTTTTAATAAATTTTTTTTTTAAGGACC
CCCCCCACCCCTCTTAAA
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