DY271079

Overview
NameDY271079
Unique NameDY271079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 16 OS=Schizosaccharomyces pombe GN=ubp16 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.188e-15
Identity = 51/132 (38.64%), Postives = 80/132 (60.61%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS-YLVDTESSSSR 389
            K++T  RAPNILTI  KRF    F   K++K++++PE+ +L PYMSD  + +  Y+L  V+VH      S  GHY  + K   G W + DD  V++  ++ VL+Q AY+L Y R S   S + ++TE++ ++
Sbjct:  318 KQMTIYRAPNILTIHFKRFTFNGFQSSKISKQISYPESFNLGPYMSDP-NCSCWYELIGVLVHAGGSTRS--GHYYSFCKSSNGVWLKFDDDFVSNSSIDRVLNQQAYILQYKRKSTSSSKHKLNTENTVTK 446          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP21_ARATH (Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana GN=UBP21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.112e-13
Identity = 65/209 (31.10%), Postives = 96/209 (45.93%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSG--RFGKLNKRVTFPETLDLSPYMSDGGDR--TDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSS 617
            K+L F + P + T  LKRF +      K+   + FP  LDLSP+MS   D   +  Y LYA V H+ +   + FGHY  YV+     W+  DD KVT +  E VLS+ AY+L Y R          T   SS  E+   V  E  P      S +++   +  + S  C+D   + +   K   +   +P+    H  +++  N E SS
Sbjct:  355 KQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLELDLSPFMSSNHDPEVSTRYHLYAFVEHIGI--RATFGHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAREG--------TPWFSSTFEQLKTV-FEATPLHFSPVSVLDNSYESVDNSSKACNDSVGVSIPDVKWPDSCCQEPKEEVFHSAESS--NNEDSS 550          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP2_ARATH (Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.477e-13
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQS---GRFGKLNKRVTFPETLDLSPYMSD--GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRG---------HWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++   +AP +LTI LKRF     GR  KLN  V F E +DL  YM     G+   VY+L  +V H   +     GHY+ YV+  +           WY V D  V  V LE+VL   AY+L Y R+
Sbjct:  834 KKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRCSGEDPPVYRLAGLVEHSGTMRG---GHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYERI 957          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP20_ARATH (Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.225e-13
Identity = 60/175 (34.29%), Postives = 81/175 (46.29%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFPETLDLSPYMSD--GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSST-----MESINPNSRSLSLPCD 500
            K+L   + P + T  LKRF++      K+ K V  P  +DL PYM +    + +  Y LYA+V H     A  +GHY  YV+     W+  DD KVT +D + VLSQ +Y+L Y R   R  +            E S +N  + PK V  SST      E    N    S PCD
Sbjct:  362 KQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLEIDLQPYMRNIQENEVSTKYHLYALVEHFGYSVA--YGHYSSYVRSAPKIWHHFDDSKVTRIDEDMVLSQDSYILFYAREGTR--WFSSVYEEMQPLVEASLLN--SSPKSVLDSSTNGECLSEISYENGDKASKPCD 530          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP1_ARATH (Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana GN=UBP1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.738e-12
Identity = 50/133 (37.59%), Postives = 64/133 (48.12%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQS---GRFGKLNKRVTFPETLDLSPYMSDGGDRTD--VYKLYAVVVHVDMLNASFFGHYICYVKDFRGH---------------WYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++   +AP +LTI LKRF     GR  KL+  V F E +DLS YM       D  VY+L  +V H   L A   GHY+ Y++   GH               WY   D +V    LEEVL   AY+L Y R+
Sbjct:  956 KKVLINKAPPVLTIHLKRFSQDARGRVSKLSGHVDFQEFIDLSKYMDTRCSEEDEPVYRLAGLVEH---LGAMSRGHYVSYIRG--GHKERRDSDTKEPNSSIWYHASDSQVRPASLEEVLRSEAYILFYERI 1083          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.577e-12
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGH-WYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K+L   + P+IL   LKRF   R+   K++  V FP   LDLS Y+ +  D++ +Y+LYAV  H   L     GHY  Y K    + WY  DD  V+SV+  E+ +  AY+L Y RV
Sbjct:  781 KKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGG---GHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.101e-12
Identity = 47/117 (40.17%), Postives = 58/117 (49.57%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFP-ETLDLSPYMS-DGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K+L   R P IL I LKRF   RF   KL   V FP + LDLS Y+S   G  T  Y LYA+  H   +     GHY  YV      WY  DD  V  +  E++ +  AY+L Y R+
Sbjct:  756 KKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGG---GHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.318e-11
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGH-WYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K+L   + P+IL   LKRF   R+   K++  V FP   LDLS Y+ +   ++ +Y+LYAV  H   L     GHY  Y K    + WY  DD  V+SV+  E+ +  AY+L Y RV
Sbjct:  782 KKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGG---GHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 895          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_RAT (Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus GN=Usp16 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.954e-11
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD------------------------FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K+                         +G W+ + D  V +V + +VL+  AY+L Y R+
Sbjct:  684 KQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRV-LYSLYGVVEHSGTMRS---GHYTAYAKERTASCHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYERI 825          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_MOUSE (Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.954e-11
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD------------------------FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K+                         +G W+ + D  V +V + +VL+  AY+L Y R+
Sbjct:  683 KQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRV-LYSLYGVVEHSGTMRS---GHYTAYAKERTASCHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYERI 824          
The following BLAST results are available for this feature:
BLAST of DY271079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
UBP16_SCHPO1.188e-1538.64Probable ubiquitin carboxyl-terminal hydrolase 16 ... [more]
UBP21_ARATH1.112e-1331.10Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabid... [more]
UBP2_ARATH2.477e-1337.80Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabido... [more]
UBP20_ARATH4.225e-1334.29Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabid... [more]
UBP1_ARATH2.738e-1237.59Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabido... [more]
UBP9_ARATH3.577e-1239.32Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabido... [more]
UBP8_ARATH6.101e-1240.17Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabido... [more]
UBP10_ARATH2.318e-1138.46Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabid... [more]
UBP16_RAT3.954e-1130.82Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus... [more]
UBP16_MOUSE3.954e-1130.82Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271079 ID=DY271079; Name=DY271079; organism=Citrus clementina; type=EST; length=1218bp
GGAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTA
AAAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTT
TCCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTA
CAGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAAT
GCCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACA
CTGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGG
TACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGA
CCTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCC
CAGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTA
CCATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGAT
GACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGC
AATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACA
ATATAGAGTCAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGTGG
ATACGGGAAATGCTCCGTCAAGTTCGGGGGATCGGCAGGACTTCCTCTAT
TGGCATGTAAAATTGTCTGGAGCCCAAGAAAAGGATTCAAGATGATATGA
ATATTGATGACCCTGAGACATCCCTTATCGGTCCCTAAGGGGGGCCCCTG
GTCCTGGTTAGTGAATCCAAAAGCCGTGGCTAAAAAAACCCAAAAGGTAT
GAATATAAGTTAATCCTGAACCAAGGTCCCCTTGGCGGCAAGGGAAATTA
AAAGTTTGGGGGCGAATTTTGGCCCTTGTCCCAAGGGAAAAATCCTTCGG
CCCCACCGGGTAAAATGTGGAAACATGGAAACCCCTTTTTTAACGGAGTG
GGGGGAAGGAAGAGAAAAGGGGTTTCCCAAAGAAAAGGGGAAAAAAAAAA
AAAGAAAAAATTCCCCACAAAAAACGGGGGGGGGGGGGGGGGGCGTTTTT
TTCCCCCCCAATTTTTTTTTTTTTTTTAATAAATTTTTTTTTTAAGGACC
CCCCCCACCCCTCTTAAA
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