DY271079

Overview
NameDY271079
Unique NameDY271079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_MACFA (Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis GN=USP16 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.954e-11
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVK-------------------DF----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K                   DF    +G W+ + D  V +V   +VL+  AY+L Y R+
Sbjct:  685 KQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRV-LYSLYGVVEHSGTMRS---GHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERI 825          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_HUMAN (Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.954e-11
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVK-------------------DF----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K                   DF    +G W+ + D  V +V   +VL+  AY+L Y R+
Sbjct:  682 KQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRV-LYSLYGVVEHSGTMRS---GHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERI 822          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_XENTR (Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis GN=usp16 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.164e-11
Identity = 45/135 (33.33%), Postives = 62/135 (45.93%), Query Frame = 3
Query:   33 ILTIALKRFQSGRFG--KLNKRVTFPETLDLSPYMSD------GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR------------------------GHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            ILT+ LKRFQ   F   K+N+ + FPE LDL+P+ +        G+   +Y LY V+ H   + +   GHY  +VK  R                        G WY + D  V +V L  VLS  AY+L Y R+
Sbjct:  732 ILTLHLKRFQQNGFNLRKINRHIKFPEVLDLAPFCTSKCKNIPAGESRLLYSLYGVIEHSGSMRS---GHYTAFVKLRRPNQQLCEMVLKGVIPEVSGSEPGQGSWYHISDSHVQAVSLSRVLSSQAYLLFYERM 863          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_BOVIN (Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.809e-11
Identity = 48/145 (33.10%), Postives = 67/145 (46.21%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPYMS-----DGGDRTDV-YKLYAVVVHVDMLNASFFGHYICYVK-------------------DF-----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            K++    AP +LT+  KRFQ   F   K+NK + FPE LDL+P+ +        + T V Y LY VV H   + +   GHY  Y K                   DF     +G W+ + D  V +V   +VLS  AY+L Y R+
Sbjct:  684 KQMLISLAPPVLTLHFKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEEHTRVLYSLYGVVEHSGTMRS---GHYTAYAKTRTANTHLSNLVLHGDIPQDFEMESTKGQWFHISDTHVQAVPTTKVLSSQAYLLFYERI 825          
The following BLAST results are available for this feature:
BLAST of DY271079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
UBP16_MACFA3.954e-1132.41Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca... [more]
UBP16_HUMAN3.954e-1132.41Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo s... [more]
UBP16_XENTR5.164e-1133.33Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopu... [more]
UBP16_BOVIN8.809e-1133.10Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271079 ID=DY271079; Name=DY271079; organism=Citrus clementina; type=EST; length=1218bp
GGAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTA
AAAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTT
TCCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTA
CAGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAAT
GCCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACA
CTGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGG
TACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGA
CCTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCC
CAGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTA
CCATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGAT
GACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGC
AATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACA
ATATAGAGTCAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGTGG
ATACGGGAAATGCTCCGTCAAGTTCGGGGGATCGGCAGGACTTCCTCTAT
TGGCATGTAAAATTGTCTGGAGCCCAAGAAAAGGATTCAAGATGATATGA
ATATTGATGACCCTGAGACATCCCTTATCGGTCCCTAAGGGGGGCCCCTG
GTCCTGGTTAGTGAATCCAAAAGCCGTGGCTAAAAAAACCCAAAAGGTAT
GAATATAAGTTAATCCTGAACCAAGGTCCCCTTGGCGGCAAGGGAAATTA
AAAGTTTGGGGGCGAATTTTGGCCCTTGTCCCAAGGGAAAAATCCTTCGG
CCCCACCGGGTAAAATGTGGAAACATGGAAACCCCTTTTTTAACGGAGTG
GGGGGAAGGAAGAGAAAAGGGGTTTCCCAAAGAAAAGGGGAAAAAAAAAA
AAAGAAAAAATTCCCCACAAAAAACGGGGGGGGGGGGGGGGGGCGTTTTT
TTCCCCCCCAATTTTTTTTTTTTTTTTAATAAATTTTTTTTTTAAGGACC
CCCCCCACCCCTCTTAAA
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