DY271083

Overview
NameDY271083
Unique NameDY271083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1155
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.941e-16
Identity = 56/213 (26.29%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G T  + +PA  + +A V +AS  D +  + +  E  + W  + A +R  ++R+  D LRE+   L  L + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G   T  P I  VSF G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQREWAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVGALLTGHPDIAKVSFTG 228          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.941e-16
Identity = 65/232 (28.02%), Postives = 101/232 (43.53%), Query Frame = 2
Query:  191 FVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA---SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYGITRWG 868
            F+N  W     G   ++ NP+  +KI  V E    D ++ ++A   A      W  L A  RG+++ Q+ D +      L  L +++ GK  L     +++  I    +  G + ++ G  IP++  N M      P+GV G IT +NFP  +L W    AL CGN VV K              L+ EV      PG +      G  +G A +  P+I  ++F G T  G
Sbjct:   35 FINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTD-DNVMCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLKPAEQTPLTALYLASLIKEV---GFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVG 262          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLU (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.941e-16
Identity = 57/206 (27.67%), Postives = 85/206 (41.26%), Query Frame = 2
Query:  239 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            NPA  + +  + EAS E  +  ++A   A   W +     R E + ++ D + E       L S   GK L      E+  ++D+  F  G +R LNG         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L  ++F      G I   F  G  +G   T  P++ +VS  G
Sbjct:   23 NPATGEVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP----AGVINVLFGRGKTVGDPLTGHPKVRMVSLTG 224          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: MMSA_PSEAE (Methylmalonate-semialdehyde dehydrogenase [acylating] OS=Pseudomonas aeruginosa GN=mmsA PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 6.453e-16
Identity = 61/223 (27.35%), Postives = 93/223 (41.70%), Query Frame = 2
Query:  185 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G FV G      P     NP +N  +A +  AS E  E+ + +  E    W E P  +R  V+ +    L+E    L +++S E+GK   +  G+V   I++ + A  +   L G  + +   N        PLGV   IT FNFP  +  W   +A+ CGN  + K               ++E+F     P  +     GG E      K P++  VSF G
Sbjct:   11 GAFVEGLGAQRIPVS---NPLDNSTLAEIACASAEQVEQAVASARETFASWKETPVSERARVMLRYQALLKEHHDELAKIVSSELGKTFEDAKGDVWRGIEVVEHACNVPSLLMGETVENVARNIDTYSITQPLGVCVGITPFNFPAMIPLWMFPLAIACGNAFILKPSEQVPLTSVR----LAELFLEAGAPKGVLQVVHGGKEQVDQLLKHPQVKAVSFVG 226          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_BURP6 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.427e-16
Identity = 54/213 (25.35%), Postives = 98/213 (46.01%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G T  + +PA  + +A V +AS +D +  + +  E  + W  + A +R  ++R+  + LRE+ + L  L   + GK + E    ++    D+ ++  GL+  + G  +P  RP   +     PLGV   I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G   +G   +  P I  VSF G
Sbjct:   21 GKTFDTFDPATGELLARVQQASADDVDRAVASAREGQREWAAMTAMQRSRILRRAVELLRERNNALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPL-RPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALK----LAEIYTEAGVPAGVFNVVQGDGSVGALLSAHPGIAKVSFTG 228          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.427e-16
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G T  + +PA  + +A V +AS  D +  + +  E  + W  + A +R  ++R+  D LRE+   L  + + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G   T  P I  VSF G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQREWAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVGALLTGHPDIAKVSFTG 228          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.427e-16
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G T  + +PA  + +A V +AS  D +  + +  E  + W  + A +R  ++R+  D LRE+   L  + + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G   T  P I  VSF G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQREWATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVGALLTGHPDIAKVSFTG 228          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ABDH_ESCF3 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ydcW PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.427e-16
Identity = 57/206 (27.67%), Postives = 84/206 (40.78%), Query Frame = 2
Query:  239 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            NPA    +  + EAS E  +  ++A   A   W +     R E + ++ D + E       L S   GK L      E+  ++D+  F  G +R LNG         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L  ++F      G I   F  G  +G   T  P++ +VS  G
Sbjct:   23 NPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP----AGVINVLFGRGKTVGDPLTGHPKVRMVSLTG 224          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSM (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.427e-16
Identity = 57/206 (27.67%), Postives = 84/206 (40.78%), Query Frame = 2
Query:  239 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            NPA    +  + EAS E  +  ++A   A   W +     R E + ++ D + E       L S   GK L      E+  ++D+  F  G +R LNG         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L  ++F      G I   F  G  +G   T  P++ +VS  G
Sbjct:   23 NPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP----AGVINVLFGRGKTVGDPLTGHPKVRMVSLTG 224          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ROCA_GEOTN (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.101e-15
Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 2
Query:  227 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLR 874
            ++S+NPAN  + I  V +A+ E  E  MK   EA + W       R +++ +    +R + H     L  E GK   E   +  E ID  ++      +L   +    RP       + PLGV  VI+ +NFP A++      ALV GN V+ K                +EV E   LP  +     G GAE+G    + PR   +SF G    G+R
Sbjct:   52 ITSVNPANKAEVIGRVAKANKELAERAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGKPWREADADTAEAIDFMEYYGRQMLKLKDGIPVESRPGETNRFFYIPLGVGVVISPWNFPFAIMAGTTVAALVTGNTVLLKPASATPVVAYK----FAEVLEEAGLPAGVLNYIPGSGAEVGDYLVEHPRTRFISFTGSRDVGIR 265          
The following BLAST results are available for this feature:
BLAST of DY271083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
BETB_BURS34.941e-1626.29Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
AL1A3_RAT4.941e-1628.02Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
ABDH_ECOLU4.941e-1627.67Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
MMSA_PSEAE6.453e-1627.35Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
BETB_BURP68.427e-1625.35Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURCJ8.427e-1625.82Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC8.427e-1625.82Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
ABDH_ESCF38.427e-1627.67Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOSM8.427e-1627.67Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ROCA_GEOTN1.101e-1528.901-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YM14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271083 ID=DY271083; Name=DY271083; organism=Citrus clementina; type=EST; length=1155bp
CTAATTCATTCCCACTCACTTTCATGTGACATTGTCTTACATAACTAATC
TTTTTTCAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAA
TATGGGATGTGACTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTT
TCTGAGTGAGATCGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATG
GCAAGTGGAAGGCACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAAC
AATCAGAAAATTGCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGA
AGGCATGAAAGCTTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAG
CTCCTAAGAGAGGGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAA
AAACTGCATCATCTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCT
TCCAGAAGGAATTGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTG
CTGTGGGTTTAAGCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGT
CCCAATCATATGATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGT
CATTACAGCATTTAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCA
TTGCACTAGTCTGCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACT
CCTTTGATCACCATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAG
GAACAAGTTACCTGGTGCAATTTTTACCTCTTTTTGTGGGGGGGCTGAAA
TAGGTCAAGCAAAAACAAAAGATCCACGTATTTTTCTGGTTTCATTTTAT
GGGATAACAAGGTGGGGTTTAAGGTGCCAAAAACAATGCCCTCAAAAATT
GGTAAAGTTTTACTTGAATTAAATTGGAAAACAAGCAATTAATTTTTAAG
GGATAATGCCAAAATACAAAAAAACTGTTTCCTTTCTGTCCCATTTTCCG
GGGGGTCGGAAAAAGCGGGGCCAGCCCTGGCCCAACTTTTTTTTTAAAAA
GGGCCTTTTTCCCCAAAAACCAATTACACAAAAAACTGGGCCTTTTAATC
ACACCAATATTAGTGGGTTAACAAAAATAATTATTAAAAAAATAGAAAAA
ACTTT
back to top