DY271083

Overview
NameDY271083
Unique NameDY271083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1155
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_PSEA8 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.028e-21
Identity = 70/243 (28.81%), Postives = 116/243 (47.74%), Query Frame = 2
Query:  191 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQCPQKLVK 907
            ++ G++   + G T  +INPAN + +A V  AS ED E  +++  E  K+W  + A +R  ++R+  D LRE+   L  L +++ GK L E    ++    D+ ++  GL   + G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G G E+GQ  T+ P I  +SF G T  G +         +K
Sbjct:   10 YIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPL-RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALK----LAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLK 247          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.028e-21
Identity = 70/243 (28.81%), Postives = 116/243 (47.74%), Query Frame = 2
Query:  191 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQCPQKLVK 907
            ++ G++   + G T  +INPAN + +A V  AS ED E  +++  E  K+W  + A +R  ++R+  D LRE+   L  L +++ GK L E    ++    D+ ++  GL   + G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G G E+GQ  T+ P I  +SF G T  G +         +K
Sbjct:   10 YIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDLLRERNDELAALETLDTGKPLAETRAVDIVTGADVLEYYAGLVPAIEGEQIPL-RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALK----LAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLK 247          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_ECO27 (Betaine aldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.753e-21
Identity = 69/214 (32.24%), Postives = 103/214 (48.13%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYG 853
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G GAE GQ  T  P I  VSF G
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGCQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALK----LAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTG 229          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: IOLA_LACCA (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Lactobacillus casei GN=iolA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.290e-21
Identity = 70/228 (30.70%), Postives = 106/228 (46.49%), Query Frame = 2
Query:  191 FVNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYGITRWG 868
            F+NGKW  A   T  ++ NPA    +A V  ++ ED  + + A  EA KIW ++  PKR +++ +    L E    LGR+++ E GK L E + EV   I+  +FA G+   + G  + S   +        P+GVVG IT FNFP  V  W   +A+  GN  + K             + + E+F+   LP  +     G  ++       P I  +SF G  R G
Sbjct:   14 FINGKWVDAKTETFENVYNPATGDVLARVPHSTSEDVADAVTAAKEAFKIWQKVSIPKRAKILFKYQQLLVEHQEELGRIVTEENGKSLDEAVAEVGRGIENVEFAAGVPTLMMGDSLSSVATDVEATNYRYPIGVVGGITPFNFPMMVPCWMFPMAVATGNTFILK----PSEKTPLTSQRLVELFQEAGLPDGVLNIVNGAVDVVNGILDHPDIKAISFVGSERVG 237          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: IOLA_BACHD (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus halodurans GN=iolA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.290e-21
Identity = 68/223 (30.49%), Postives = 100/223 (44.84%), Query Frame = 2
Query:  191 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            F+ G+W     G T +  NPA  + +A V  ++ ED +  +    EA K W + P P+R  V+ +    L E    L RL+++E GK   E  GEVQ  I+  +FA G    + G  +P    N        P+GVVG IT FNFP  V  W   +A+ CGN  V K               ++E+F    LP  +     G  ++     + P +  +SF G
Sbjct:   13 FIGGQWVESDSGKTEAVPNPATGEILAHVPISNREDLDRAVSVAKEAFKTWGKTPVPRRARVLFKYQQLLVENWEELARLVTLENGKSYKEAYGEVQRGIECVEFAAGAPSLMMGKQLPDIATNIESGMYRYPIGVVGGITPFNFPMMVPCWMFPLAIACGNTFVLK----PSERTPLLANRLAELFTEAGLPEGVLNIVHGAHDVVNGLLEHPDVKAISFVG 231          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_PSEU5 (Betaine aldehyde dehydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=betB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.290e-21
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 2
Query:  224 TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYG 853
            T  SINPAN + +A V EA   D E  +++  +  +IW  L   +R  ++R+  D LRE+   L  L +++ GK L E    ++    D+ ++  GL+  + G  IP  R +  +     PLGVV  I A+N+P  +  W A  AL  GN +++K               ++E+F    LP  +F    G GA +G   T+ PRI  VSF G
Sbjct:   23 TFESINPANGEVLAEVAEAGAADLERAVESAEQGQRIWAALTGIERARIMRRAVDLLRERNDELALLETLDTGKPLSETRSVDIITGADVLEYYAGLAPAIEGEQIPL-RDSSFVYTRREPLGVVAGIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLSALR----LAEIFSEAGLPDGVFNVLTGSGAGVGALITEHPRIAKVSFTG 229          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_PSESM (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. tomato GN=betB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.906e-21
Identity = 69/230 (30.00%), Postives = 109/230 (47.39%), Query Frame = 2
Query:  224 TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQCPQKLVK 907
            T  SINPAN + +A +  AS ED E  + A  +  KIW  + A +R  ++R+  D LRE+   L  L +++ GK + E    ++    D+ ++  GL   + G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G G E+G   T+ PRI  VSF G T  G +         +K
Sbjct:   23 TFDSINPANGEVLAKIQRASKEDVERAVVAAEKGQKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIPL-RDSSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLK----LAEIYTEAGVPNGVFNVLTGSGREVGTWITEHPRIEKVSFTGGTDTGKKVMASASSSSLK 247          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.101e-21
Identity = 71/243 (29.22%), Postives = 115/243 (47.33%), Query Frame = 2
Query:  191 FVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQCPQKLVK 907
            ++ G++ A   G T  SINPA  + +A V  AS  D +  + + +E  K+W  + A +R  ++R+  D LRE+   L  L +++ GK L E    ++    D+ ++  GL   + G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G E+GQ  T+ P I  VSF G T  G +         +K
Sbjct:   10 YIGGQYVAASSGQTFDSINPATGEVLAKVQRASQADVDRAVASAAEGQKVWAAMTAMQRSRILRRAVDILRERNDELAELETLDTGKPLSETRYVDIVTGADVLEYYAGLIPAIEGEQIPL-RESSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALK----LAEIYTEAGLPAGVFNVLTGSGREVGQWLTEHPGIEKVSFTGGTVTGKKVMASASSSSLK 247          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.101e-21
Identity = 67/225 (29.78%), Postives = 111/225 (49.33%), Query Frame = 2
Query:  191 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYG 853
            +++G++     G T  SINPA  + IAT+ +AS  D E  +K+ +E  K+W    A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL+  + G  +P  R +        PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G EIGQ  T+   I  +SF G
Sbjct:   10 YIHGQYTDATSGKTFDSINPATGEVIATIQQASQTDIEAAVKSAAEGQKVWAAKTAVERSRILRRAVDILRERNDELAQLETLDTGKAFSETSTVDIVTGADVLEYYAGLATAIQGEQVPL-RESSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTAFK----LAEIYSEAGLPAGVFNVVQGAGREIGQWLTEHAVIEKISFTG 229          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOTN (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolA1 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.136e-20
Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 2
Query:  191 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            ++ G+W       T +  NPA  + +A V  ++ ED +  + A  EA K W + P P+R  ++ +    L E    L RL+++E GK   E  GE+Q  I+  +FA G    + G  +PS            P+GVVG IT FNFP  V  W   +A+ CGN  V K               ++E+F+   LP  +     G  ++     + P +  +SF G
Sbjct:   11 YIGGQWVESRSAKTEAVPNPATGEVLAYVPISTREDLDRAVAAAKEAFKTWSKTPVPRRARILFKYQQLLVEHWEELARLVTLENGKSYNEAYGEIQRGIECVEFAAGAPTLMMGRQLPSIATGIESGMYRYPIGVVGGITPFNFPMMVPCWMFPLAIACGNTFVLK----PSERTPMLANRLAELFKEAGLPDGVLNIVHGAHDVVNGLLEHPDVKAISFVG 229          
The following BLAST results are available for this feature:
BLAST of DY271083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
BETB_PSEA81.028e-2128.81Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA71.028e-2128.81Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_ECO271.753e-2132.24Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
IOLA_LACCA2.290e-2130.70Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACHD2.290e-2130.49Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_PSEU52.290e-2132.08Betaine aldehyde dehydrogenase OS=Pseudomonas stut... [more]
BETB_PSESM3.906e-2130.00Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_PSEMY5.101e-2129.22Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_ACIAD5.101e-2129.78Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
IOLA1_GEOTN1.136e-2029.15Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271083 ID=DY271083; Name=DY271083; organism=Citrus clementina; type=EST; length=1155bp
CTAATTCATTCCCACTCACTTTCATGTGACATTGTCTTACATAACTAATC
TTTTTTCAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAA
TATGGGATGTGACTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTT
TCTGAGTGAGATCGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATG
GCAAGTGGAAGGCACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAAC
AATCAGAAAATTGCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGA
AGGCATGAAAGCTTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAG
CTCCTAAGAGAGGGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAA
AAACTGCATCATCTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCT
TCCAGAAGGAATTGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTG
CTGTGGGTTTAAGCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGT
CCCAATCATATGATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGT
CATTACAGCATTTAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCA
TTGCACTAGTCTGCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACT
CCTTTGATCACCATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAG
GAACAAGTTACCTGGTGCAATTTTTACCTCTTTTTGTGGGGGGGCTGAAA
TAGGTCAAGCAAAAACAAAAGATCCACGTATTTTTCTGGTTTCATTTTAT
GGGATAACAAGGTGGGGTTTAAGGTGCCAAAAACAATGCCCTCAAAAATT
GGTAAAGTTTTACTTGAATTAAATTGGAAAACAAGCAATTAATTTTTAAG
GGATAATGCCAAAATACAAAAAAACTGTTTCCTTTCTGTCCCATTTTCCG
GGGGGTCGGAAAAAGCGGGGCCAGCCCTGGCCCAACTTTTTTTTTAAAAA
GGGCCTTTTTCCCCAAAAACCAATTACACAAAAAACTGGGCCTTTTAATC
ACACCAATATTAGTGGGTTAACAAAAATAATTATTAAAAAAATAGAAAAA
ACTTT
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