DY271091

Overview
NameDY271091
Unique NameDY271091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271091 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.641e-11
Identity = 77/264 (29.17%), Postives = 113/264 (42.80%), Query Frame = 2
Query:   29 LNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALT--LLNYHPTS-----ASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSP---KPPTN------FHRRLTLLN--TQNT-----ING--FTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNAN-----------TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDF 712
            L   V NHK+ VV AD +Y +PF  + + +  G++  VLLT +Q P++ Y  +        A     T  +L Y   S     A     + P   P ++D   + +F+    A M SP   K P        F   L L N  T NT      NG  FT  +INNVS   P        +  +  A+ Q  P   F+ ++    PPV  +            T G+  Y L  N+ V +ILQ+ + +    +E HP HLHG++F
Sbjct:  232 LFFGVANHKLTVVAADASYTKPFSTNVIMLGPGQTTDVLLTADQPPAHYYMAAHAYNSANAAFDNTTTTAILKYKDASCVTLQAKSQARAIPAQLPGFNDTATAAAFT----AQMKSPSKVKVPLEIDENLFFTVGLGLFNCPTPNTQRCQGPNGTRFTA-SINNVSFVFPK-------QNSIMQAYYQGTPTGVFTTDFP-PTPPVTFDYTGNVSRGLWQPTRGTKAYKLKFNSQVQIILQDTSIV---TTENHPMHLHGYEF 479          
BLAST of DY271091 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.979e-11
Identity = 70/245 (28.57%), Postives = 105/245 (42.86%), Query Frame = 2
Query:   41 VKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALT---LLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKP---PTNFHRRLTL-----LNTQNTI---NGFTKWA-INNVSLTLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFLGI 721
            V  H   VVE D  YV+PF+ D + I  G++ +VLLT ++     Y ++A      P     +T    ++Y  T +S   +   P  P  +    + +F+N + +L     P   PT     L       LN   T    NG    A INNV+  +P T  L +  +     F  +    PP  F+     +    N  T  G+ +Y L  N TV ++LQ+   I P   E HP HLHG +F  +
Sbjct:  236 VAGHIFTVVEVDAVYVKPFKTDTVLIAPGQTTNVLLTASKSAG-KYLVTASPFMDAPIAVDNVTATATVHYSGTLSSSPTILTLP--PPQNATSIANNFTNSLRSLNSKKYPALVPTTIDHHLFFTVGLGLNACPTCKAGNGSRVVASINNVTFIMPKTALLPAHYFNTSGVFTTDFPKNPPHVFNYSGGSV---TNMATETGTRLYKLPYNATVQLVLQDTGVIAP---ENHPVHLHGFNFFEV 471          
The following BLAST results are available for this feature:
BLAST of DY271091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
LAC13_ARATH7.641e-1129.17Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC4_ARATH9.979e-1128.57Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271091 ID=DY271091; Name=DY271091; organism=Citrus clementina; type=EST; length=1096bp
GATAGCTAGTACCATTGCACTCGCTTCACTCAACTTGGCTGTCAAGAATC
ACAAAATGGTGGTTGTGGAGGCTGATGGAAATTACGTGCAACCATTTGAA
GTAGATGACATGGACATATATTCTGGTGAGAGCTATTCGGTCTTATTAAC
AACAAATCAAGATCCCTCCTATAATTACTGGATCTCAGCTGGTGTTAGGG
GAAGAAAACCTGCAACCCCTCCGGCCCTAACACTCTTAAACTATCATCCC
ACTTCTGCTTCCAAAATCCCTCTCTCCCCACCACCTATAACCCCTAGATG
GGACGACTATGATCACAGCAAATCATTCTCCAACAAAATATTTGCCCTAA
TGGGATCCCCCAAGCCTCCCACAAATTTCCACCGTCGGCTCACCCTTCTT
AACACTCAAAACACCATTAACGGGTTCACTAAGTGGGCTATTAACAATGT
GTCCCTGACTTTACCCCCCACTCCTTACTTAGGATCCATCAAATATGGTC
TTAAAGATGCTTTTGATCAGAATGGTCCCCCCGAAAACTTCTCGAATGAG
TATGACGTGATGAAACCTCCTGTAAACGCTAATACAACTCTTGGAAGTGG
GGTTTACATGCTTGGTTTAAACACCACAGTTGATGTTATACTTCAAAATG
CAAACGCGATAAGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGCAT
GGGCATGATTTTTTGGGTATTAGGGCGCGGAGAAAGGAAGTTTACGAAAA
AAAATGAGAAAAAATTTACCTTGAAAAAACCCACATTTGAAAAATACTGC
GGTGATATTCCCATATGGCTGGACTGCTTTAAAAATTTGTTGCTAAAAAT
CCAGGGTGCTTGGGCATTTCCCTGGCCATATTGAACCCCCTTTTTCATAT
TGGGAATGGGGTGTGGTTTCTTGCTCTTGGGGTTTAAAACCCTTTGGAAA
AAATTCCAAAACAAGGCGTTTGGCTTGGGGGTTTTACTTGGGGAAAAAGG
GTTCAAAAAACCCCCAAAAAAAAATTTAGAGGCCCAACCAGTTTTTTGTT
TTTTAAATTTACTTTTTTTTCCCCCGGGAAATTTTTCCAAATGTTT
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