DY271109

Overview
NameDY271109
Unique NameDY271109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1121
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.184e-37
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 2
Query:  266 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDG-TTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQS 568
            Q+++P PFLTKTYQLVDD A D ++SW  D  +TFVVW P  FARD+LP YFKHNNFSSFVRQLNTYGF+KVVP+RWEF+N+ FR+GE+QLL EI RRK  S
Sbjct:   18 QKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSS 119          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 7.027e-36
Identity = 82/190 (43.16%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSP-----SNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVGEMKNLCNNI 832
            P PFLTKT Q+V++ A D+VISW K+G +FVVW P  FARDLLP +FKH NFSSFVRQLNTYGF+KVVPDRWEF+N  FRRGEQ LL  I+RRK  +                   P + P     ++SG ++                + +       A+I  EN++LRK+N  L  ++   +  C  +
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDR----------------SSSSASSPPRADITSENEQLRKDNQTLTMELARARRHCEEL 201          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.015e-34
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:  275 MPTPFLTKTYQLVDDQAIDDVISWNKD-----GTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            +P PFLTKTYQLVDD A D V+SW  D      ++FVVW P  FARD+LP YFKH+NFSSFVRQLNTYGF+KVVP+RWEF+N+ FR+GE+QLL EI RRK
Sbjct:   22 VPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.264e-33
Identity = 61/96 (63.54%), Postives = 80/96 (83.33%), Query Frame = 2
Query:  272 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            S+P PFL+KTY +V+D A D ++SW+    +F+VW+P  F+RDLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL++I RRK
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRK 143          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.263e-33
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  191 MTPPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            + PPP A   NG               + P PFL KTY++VDD A D V+SW     +FVVWN   FARDLLP+YFKH+NFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   19 VAPPPGAAVSNGVA-------------TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK 128          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 9.497e-33
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFLTKTY LV+D A D V+SW++ G +FVVW+P +FA  LLPR FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I+RRK
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRK 133          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.240e-32
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   39 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 132          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.240e-32
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   37 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 130          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.620e-32
Identity = 78/188 (41.49%), Postives = 101/188 (53.72%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVGEMKNLCNNIFSL 841
            P PFL KTY++V+D   D VISWN+ GT FVVW P  FARDLLP  FKH NFSSFVRQLNTYGF+KV   RWEFSN+ FR+G+++L+  I+RRK Q                    P  +  N    Q I             T+           +++EN  L+ EN  L+ ++G+ K  C  +  L
Sbjct:   38 PPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVV--------PTTTMVNQEGHQRIGIDHHHEDQQSSATS----SSFVYTALLDENKCLKNENELLSCELGKTKKKCKQLMEL 213          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.714e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFL KTY++V+D A + V+SW   G +FVVWNP  F+RDLLP+YFKHNNFSSF+RQLNTYGF+K+ P+RWEF+N+ F RG   LL+ I RRK
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRK 111          
The following BLAST results are available for this feature:
BLAST of DY271109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFB4C_ORYSJ2.184e-3770.59Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB1_ORYSJ7.027e-3643.16Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFB4A_ORYSJ1.015e-3469.00Putative heat stress transcription factor B-4a OS=... [more]
HFA1A_ARATH3.264e-3363.54Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ4.263e-3356.10Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA2C_ORYSJ9.497e-3368.09Heat stress transcription factor A-2c OS=Oryza sat... [more]
HSF8_SOLPE1.240e-3264.89Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC1.240e-3264.89Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSFB3_ARATH1.620e-3241.49Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HFA4D_ORYSJ4.714e-3263.83Heat stress transcription factor A-4d OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YO01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271109 ID=DY271109; Name=DY271109; organism=Citrus clementina; type=EST; length=1121bp
GTTTCGTTTCCTCTTAGCTCGTTCTCTCGCTTCATCTCGTTCCCTCTCCC
TCTTTAACTCCTCATTCCGAAATGACGAACCTTCTAGAATCACCATAACC
AACTTCTCACCTTCACCCTCCCCACAAAGAAAAATTAAAGAATAAAAAAA
ATCTCCCCTTTCAACCTGATTTCAATTACACTTTATCCATATGACTCCGC
CTCCGACGGCAATGGAGCAGAACGGAGACTCTACACCGTCGCCGACGACT
ACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGTTTTTGACGAAAAC
TTATCAGTTAGTTGACGATCAGGCGATTGACGACGTTATTTCGTGGAACA
AAGACGGAACTACGTTCGTCGTCTGGAATCCTACCATTTTCGCTAGAGAT
TTGCTTCCTAGATACTTCAAACACAACAATTTTTCTAGCTTCGTTCGTCA
ACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGATCGGTGGGAGTTTT
CTAACGACTGCTTCCGCCGTGGCGAGCAACAGCTTCTGCGTGAAATTCAG
CGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTGTCACCGTTGCGGT
GCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCGCCGTCGAATTCGG
GGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGCAGCGGGAGCGGCC
GGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGTGTGCGGAGATAGT
TGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAGCTGAACAAGCAGG
TGGGGGAAATGAAGAATCTCTGTAACAATATATTTAGTTTGGAGGCCAAA
TAACCCCCTGGGTGGTGTTGGGGGGGGGGGACGGCGGGGGGTCAGGGGGC
AAAGGGGATTTTTTTATCCAAAAAAGCTGTTTTCCTGGGGGTGAGGGGAA
AAGGAAAAAGGATATAGAGTTTGTTTTGCGGTTTCCATAAGGGCGGCCAA
ACCCCGCGAGGGGGAAGGGAAATAAGGGGCGCGGGGAAAACCATTTTCCC
CTTCATAAGGGGGGGGAAAAAAACGCACAGCCCTTATTTGTAGTCCCGGT
GATTTTAAAAAGTATACCGTC
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