DY271109

Overview
NameDY271109
Unique NameDY271109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1121
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.284e-29
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 2
Query:  284 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            PFL+KT+ LVDD  +D VISW   G +FVVW+P  FAR +LPR FKHNNFSSFVRQLNTYGF+K+  D+WEF+N+ F RG++ LL+ I RR+
Sbjct:   55 PFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRR 146          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.284e-29
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 2
Query:  284 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            PFL+KTY +VDD   ++V+SW+    +FVVW+   F++ LLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG +QLL+ I RRK
Sbjct:   27 PFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRK 118          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.676e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  272 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            S+P PFLTKTY++VDD + D V++W+++  +F+V NP  F+RDLLPR+FKH NFSSF+RQLNTYGF+KV P++WEF ND F RG   L++ I RRK
Sbjct:   10 SLP-PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRK 104          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.190e-29
Identity = 56/94 (59.57%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFLTKTY++V+D A D V+SW+    +FVVW+   F+  LLPRYFKH+NFSSF+RQLNTYGF+K+ PDRWEF+N+ F  G++ LL+ I+RR+
Sbjct:   42 PPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRR 135          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.878e-29
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  197 PPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRR 556
            PPP  ME                  + P PFLTKT+++VDD   D ++SWN+ GT+FVVW+   F+  LLPR+FKH+NFSSF+RQLNTYGF+K+  +RWEF+N+ F  G++QLL+ I+RR
Sbjct:   14 PPPQPME--------------GLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRR 119          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.320e-29
Identity = 60/124 (48.39%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  197 PPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQS 568
            PPP  ME                Q + P+PFLTKT+++V D   + ++SWN+ G +FVVW+P  F+  +LP YFKHNNFSSFVRQLNTYGF+K+  +RWEF N+ F  G++ LL+ I+RR   S
Sbjct:   13 PPPVPME--------------GLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSS 122          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.320e-29
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 2
Query:  272 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            S+P PFL+KTY++VDD + D V+ W   GT+FVV N   F RDLLP+YFKHNNFSSFVRQLNTYGF+KV P++WEF+N+ F +G++  L+ I RRK
Sbjct:    9 SLP-PFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRK 103          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.419e-28
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  197 PPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGT--TFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKI 562
            PPP  ME  G               + P PF+ KTY++V D A D V+SW   G+  +FVVW+P   A  +LPR+FKH NFSSFVRQLNTYGF+KV PDRWEF+N+ F  G++ LL+ I+RR++
Sbjct:   78 PPPRPMEGLG--------------EAGPAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRRV 187          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.129e-28
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 2
Query:  284 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            PFL+KTY LV +  +D VISW   G +FVVW+P+ FARD+LP +FKHNNFSSFVRQLNTYGF+KV  DRWEF+++ F R  + LL++I RR+
Sbjct:   67 PFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRR 158          
BLAST of DY271109 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.129e-28
Identity = 54/94 (57.45%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  278 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 559
            P PFL+KTY++V+D + D VISW+    +F+VW+   F+  LLPR+FKH+NFSSF+RQLNTYGF+KV PDRWEF+N+ F  G++ LL+ I+RR+
Sbjct:   29 PPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 122          
The following BLAST results are available for this feature:
BLAST of DY271109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSFA3_ARATH1.284e-2963.04Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA1B_ARATH1.284e-2963.04Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA4C_ARATH1.676e-2960.42Heat stress transcription factor A-4c OS=Arabidops... [more]
HSFA2_ARATH2.190e-2959.57Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA7A_ARATH4.878e-2950.00Heat stress transcription factor A-7a OS=Arabidops... [more]
HFA7B_ARATH8.320e-2948.39Heat stress transcription factor A-7b OS=Arabidops... [more]
HFA4B_ORYSJ8.320e-2961.46Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA6B_ORYSJ1.419e-2850.00Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSFA3_ORYSJ4.129e-2861.96Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSF30_SOLPE4.129e-2857.45Heat shock factor protein HSF30 OS=Solanum peruvia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YO01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271109 ID=DY271109; Name=DY271109; organism=Citrus clementina; type=EST; length=1121bp
GTTTCGTTTCCTCTTAGCTCGTTCTCTCGCTTCATCTCGTTCCCTCTCCC
TCTTTAACTCCTCATTCCGAAATGACGAACCTTCTAGAATCACCATAACC
AACTTCTCACCTTCACCCTCCCCACAAAGAAAAATTAAAGAATAAAAAAA
ATCTCCCCTTTCAACCTGATTTCAATTACACTTTATCCATATGACTCCGC
CTCCGACGGCAATGGAGCAGAACGGAGACTCTACACCGTCGCCGACGACT
ACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGTTTTTGACGAAAAC
TTATCAGTTAGTTGACGATCAGGCGATTGACGACGTTATTTCGTGGAACA
AAGACGGAACTACGTTCGTCGTCTGGAATCCTACCATTTTCGCTAGAGAT
TTGCTTCCTAGATACTTCAAACACAACAATTTTTCTAGCTTCGTTCGTCA
ACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGATCGGTGGGAGTTTT
CTAACGACTGCTTCCGCCGTGGCGAGCAACAGCTTCTGCGTGAAATTCAG
CGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTGTCACCGTTGCGGT
GCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCGCCGTCGAATTCGG
GGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGCAGCGGGAGCGGCC
GGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGTGTGCGGAGATAGT
TGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAGCTGAACAAGCAGG
TGGGGGAAATGAAGAATCTCTGTAACAATATATTTAGTTTGGAGGCCAAA
TAACCCCCTGGGTGGTGTTGGGGGGGGGGGACGGCGGGGGGTCAGGGGGC
AAAGGGGATTTTTTTATCCAAAAAAGCTGTTTTCCTGGGGGTGAGGGGAA
AAGGAAAAAGGATATAGAGTTTGTTTTGCGGTTTCCATAAGGGCGGCCAA
ACCCCGCGAGGGGGAAGGGAAATAAGGGGCGCGGGGAAAACCATTTTCCC
CTTCATAAGGGGGGGGAAAAAAACGCACAGCCCTTATTTGTAGTCCCGGT
GATTTTAAAAAGTATACCGTC
back to top