DY271142

Overview
NameDY271142
Unique NameDY271142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1101
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 6.430e-58
Identity = 123/261 (47.13%), Postives = 157/261 (60.15%), Query Frame = 1
Query:   61 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVLIDDWKPSPNDVNAGRLPGTVQTT 807
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+   W P+P D  AGR PG   TT
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTT 284          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.444e-57
Identity = 110/194 (56.70%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  223 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATD  + FK+AIWFWMTAQPPKPS H V+   W PS  D  AGR+PG
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPG 213          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.213e-56
Identity = 109/194 (56.19%), Postives = 130/194 (67.01%), Query Frame = 1
Query:  223 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H V+   W PS  D  AGR PG
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPG 213          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.584e-56
Identity = 110/250 (44.00%), Postives = 137/250 (54.80%), Query Frame = 1
Query:   67 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVLIDDWKPSPNDVNAGRLPG 792
            CGS      CP   CCS  G+CGLT  YCC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEV+  +W PS  D+ AGR PG
Sbjct:   26 CGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPG 252          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 6.655e-55
Identity = 103/192 (53.65%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  229 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    KY+GRGPIQ+S+NYNY              NNPDL+A D V+SFK+A+WFWMTAQ PKPS H+V+   W PS  D   GR+PG
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPG 193          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.796e-53
Identity = 101/196 (51.53%), Postives = 128/196 (65.31%), Query Frame = 1
Query:  205 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+            P    YYGRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+V+ + W PS +D ++GRLPG
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI-----------TPSDPPYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPG 200          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.617e-51
Identity = 96/187 (51.34%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  232 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQL+   NY R            NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH V+I  W PSP D  A R+PG
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPG 198          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 5.830e-51
Identity = 95/187 (50.80%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  232 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQL+   NY R            NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH V+I  W PSP D  A R+PG
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPG 198          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.910e-47
Identity = 97/189 (51.32%), Postives = 120/189 (63.49%), Query Frame = 1
Query:  226 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+V+   W PS  D +A R PG
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPG 192          
BLAST of DY271142 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.646e-46
Identity = 96/197 (48.73%), Postives = 122/197 (61.93%), Query Frame = 1
Query:  205 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVLIDDWKPSPNDVNAGRLPG 792
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+V++  W PS  D  AGR+PG
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPG 207          
The following BLAST results are available for this feature:
BLAST of DY271142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI7_ORYSI6.430e-5847.13Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI2_HORVU2.444e-5756.7026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE1.213e-5656.19Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI8_POPTR1.584e-5644.00Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHID_SOLLC6.655e-5553.65Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ2.796e-5351.53Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI2.617e-5151.34Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC5.830e-5150.80Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC3.910e-4751.32Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ5.646e-4648.73Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271142 ID=DY271142; Name=DY271142; organism=Citrus clementina; type=EST; length=1101bp
CTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGG
AGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGT
GTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAA
GGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGA
CGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGA
AGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCC
AGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCA
CCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGC
TGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACT
ATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGC
GGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCCTTATCGACGATTGG
AAACCATCCCCAAATGACGTAAACGCCGGCCGGCTTCCGGGAACCGTCCA
AACAACAATATAATCAACGGTGGAATTGAAGGGGCCTCCTTTGGAAATGA
CCTGTAACTAACCCTATTGGGGTTCTTTACCCTTTTCGTGGGAAATTTGG
GAATTAGCCCGGGGAACATCTTGATTCCCCCACCCACCGGCCTTTGGGCC
CTATCCGGATGGGCACAACCCTTTGGAATCCTCTGGACCAACGTTTTTAA
AAAAAAAAAGCTTTAAAAAAACCCCCTTTAAAAAAAAATTTTAAATGTTC
CCCCTCTGTTAGGGGGGGCACACAATAAACCCGGATCCCCCCCCTTATTT
G
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