DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 5.878e-23
Identity = 71/155 (45.81%), Postives = 94/155 (60.65%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RV E+  E  RML++DELRDA LLVFA+ Q        P      L L    N +    + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNA-MNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 5.878e-23
Identity = 73/151 (48.34%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.003e-22
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+R+GE+  E  RML +DELRDA LL+FA+ Q   +   AA +     L L    N      + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITD--KLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.003e-22
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+R+GE+  E  RML +DELRDA LL+FA+ Q   +   AA +     L L    N      + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITD--KLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.710e-22
Identity = 74/156 (47.44%), Postives = 94/156 (60.26%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E  RML +DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.710e-22
Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*Q----SSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEYQ I+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q    + +         L SL    ++       S CATSGEG Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWY-----IQSTCATSGEGLYEGLDWLSNNIAN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 2.234e-22
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  +IFVV + DRDRV E+  E  RML++DELRDA LLVFA+ Q       +P      L L           S CAT+G+G Y  LEW++
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNA-MSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLA 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.499e-22
Identity = 68/150 (45.33%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E+  E  +ML +DELRDA LLVFA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAIS-EMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 8.488e-22
Identity = 69/151 (45.70%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  +IFVV + DR+R+ E+  E  RML++DELRDA LLVFA+ Q   +   AA +     L L    +      + CATSG+G Y  LEW+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITD--KLGLHSLRHRQWYIQATCATSGDGLYEGLEWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.109e-21
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  +IFVV + DR+R+ E+  E  RML +DELRDA LLVFA+ Q   +   AA +     L L      +    + CATSG+G Y  LEW+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRSWYIQAACATSGDGLYEGLEWLS 174          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARF_DUGJA5.878e-2345.81ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_ORYSJ5.878e-2348.34ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_LOCMI1.003e-2245.51ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.003e-2245.51ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_SOLTU1.710e-2247.44ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_CATRO1.710e-2246.54ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_AJECA2.234e-2246.00ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF4_XENLA6.499e-2245.33ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF1_SCHPO8.488e-2245.70ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_CRYNE1.109e-2145.70ADP-ribosylation factor OS=Cryptococcus neoformans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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