DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.213e-21
Identity = 70/156 (44.87%), Postives = 93/156 (59.62%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RV E+  E  RML +DELRDA LLVF + Q   +   AA +     L L           + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITD--KLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 5.502e-21
Identity = 67/151 (44.37%), Postives = 94/151 (62.25%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L ++VT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  +IFVV + DRDRV E+  E  RML++DELRDA LLVFA+ Q   +   AA +     L L      +    + CAT+G+G +  L+W+S
Sbjct:   30 AAGKTTIL-YKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITD--KLGLSSLRQRSWYIQATCATTGDGLFEGLDWLS 177          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 5.502e-21
Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E   E  +ML +DELRDA LL+FA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAIS-EMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 7.186e-21
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISL----VLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  +    T  +IFVV + DRDR+ E+  E   ML++DEL+DA LLV A+ Q   +   AA +   + L      P F  AT      CAT+G+G Y  LEW+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQAT------CATTGDGLYEGLEWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 7.186e-21
Identity = 67/154 (43.51%), Postives = 93/154 (60.39%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISL----VLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AG T+ L Y+++L ++VT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  +IFVV + DR R+ E+     RML++DE+R+A LLVFA+ Q       AA +   + L      P +  AT      CATSGEG Y  LEW+S
Sbjct:   28 AGKTTVL-YKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQAT------CATSGEGLYEGLEWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISL----VLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AG T+ L Y+++L +++T +PT  F ++TV+Y+NI+  V DVGG++ IR L  H    T  +IFVV + DR R+GE+     RML++DELR+A  LVFA+ Q       AA +   + L      P F  AT      CATSGEG Y  LEW+S    N
Sbjct:   28 AGKTTVL-YKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT------CATSGEGLYEGLEWLSNSLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 6.083e-20
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+V+L ++VT +PT  F ++TVE++NI+  V DVGG++ IRPL  H    T  LIFVV + DR+R+ ++  E HRM++++EL+DA +LVFA+ Q      +A       L L           S CAT G+G Y   +W++    N
Sbjct:   27 AAGKTTIL-YKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSA-AEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.945e-20
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AG T+ L Y+++L +++T +PT  F ++TV+Y+NI+  V DVGG++ IR L  H    T  +IFV+ + DR R+GE+     RML++DELR+A  LVFA+ Q      +A       L L    N      S CATSGEG Y  LEW+S    N
Sbjct:   28 AGKTTVL-YKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSA-AEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.038e-19
Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E   E  +ML  DELRDA LL+FA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAIS-EMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.038e-19
Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E   E  +ML  DELRDA LL+FA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAIS-EMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARF2_BOVIN4.213e-2144.87ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF_NEUCR5.502e-2144.37ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF4_BOVIN5.502e-2144.67ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF_CANAL7.186e-2143.87ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF_ASHGO7.186e-2143.51ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_YEAST1.601e-2042.14ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_PLAFA6.083e-2040.00ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF2_YEAST7.945e-2041.56ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF4_PONAB1.038e-1944.67ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN1.038e-1944.67ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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