DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E      +ML +DEL+DA LL+FA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAIS-EMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI   V DVGG++ IRPL  H    T  LIFVV + DR+R+ E      +ML +DEL+DA LL+FA+ Q      A        L L    N T    + CAT G G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAIS-EMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 61/155 (39.35%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+V+L ++VT +PT  F ++TVE++NI+  V DVGG++ IRPL  H    T  LIFVV + DR+R+ ++    HRM++++EL+DA +LVFA+ Q      +A       L L           S CAT G+G Y   +W++    N
Sbjct:   27 AAGKTTIL-YKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSA-AEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.359e-18
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CATSG+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.359e-18
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CATSG+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.359e-18
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CATSG+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.359e-18
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CATSG+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 9.712e-18
Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CAT+G+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.657e-17
Identity = 63/153 (41.18%), Postives = 89/153 (58.17%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRD--RVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFS-CCATSGEGHY*VLEWVS 520
            AAG T+ L Y++ L ++VT VPT  F ++TVEY+NIN  V DVGG++ IRPL  H    T  LI+V+ + D +  R+ ++ +E H +L +DELRDA LLVFA+ Q     +A     L   +          Y    CA SG+G Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLP--KAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLS 176          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.826e-17
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CA SG+G Y  L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLT 170          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARF4_RAT3.943e-1943.33ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE3.943e-1943.33ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF1_PLAFO3.943e-1939.35ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF6_RAT4.359e-1840.67ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG4.359e-1840.67ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE4.359e-1840.67ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN4.359e-1840.67ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK9.712e-1840.00ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF_GIALA1.657e-1741.18ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_XENLA2.826e-1740.00ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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