DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.826e-17
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 2
Query:   29 FLRRNRCNL*WCVSHAAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLIS-LVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            FL +++  +       +G T+ L Y+++L ++VT VPT  F ++TVEY+ IN  V D+GG+E IR L  H       LIFVV + D +R+ E+ +E HR+L D+EL  A +LVFA+ Q S    A P+  + + L L              A SG+G Y  LEW+S    N
Sbjct:   12 FLPKSKVRILMVGLDGSGKTTIL-YKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSR--NALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.402e-16
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L   VT +PT  F ++TV Y+N+   V DVGG++ IRPL  H    T  LIFVV   DRDR+ E+  E HR+++D E+RDA +L+FA+ Q        P      L L    +        CATSG+G    L W++
Sbjct:   23 AAGKTTIL-YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLT 170          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.187e-15
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRLD-IVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQ 523
            AAG T+ L Y+++L+  V  +PT  F ++TV Y+NI   V DVGG++ IRPL  H    T  LIFVV + D +R+ E+  E HR++ D E+RD  LLV A+ Q       +P +    L L    +        CA +G+G    L W+SQ
Sbjct:   31 AAGKTTIL-YKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGA-LSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQ 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.645e-15
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   77 AGNTSTLDYRVRLDIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQ 523
            AG T+ L    + + +  +PT  F ++TVEY+N+   + DVGGK  +RPL  H  L T  ++FVV +  RDR+ E+  E  ++L + ELRDA LL+FA+ Q  +       +  L+SL   L    +     C A SG G Y  L+W+S+
Sbjct:  415 AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSL-HKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 563          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.645e-15
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   77 AGNTSTLDYRVRLDIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQ 523
            AG T+ L    + + +  +PT  F ++TVEY+N+   + DVGGK  +RPL  H  L T  ++FVV +  RDR+ E+  E  ++L + ELRDA LL+FA+ Q  +       +  L+SL   L    +     C A SG G Y  L+W+S+
Sbjct:  415 AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSL-HKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 563          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-14
Identity = 56/148 (37.84%), Postives = 81/148 (54.73%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWV 517
            AG T+ L YR+++ ++VT +PT  F ++TV Y+N+   V D+GG+  IRP        T  +I+VV + DRDR+G S  E   ML ++ELR A L+VFA+ Q   +    P     SL LP   +     F   AT G G    +EW+
Sbjct:   28 AGKTTIL-YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA-MTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.239e-14
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   77 AGNTSTLDYRVRLDIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQ 523
            AG T+ L    + + +  +PT  F ++TVEY+N+   + DVG K  +RPL  H  L T  ++FVV +  RDR+ E+  E  ++L + ELRDA LL+FA+ Q  +       +  L+SL   L    +     C A SG G Y  L+W+S+
Sbjct:  395 AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSL-HKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 543          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.924e-14
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWV 517
            AG T+ L YR+++ ++VT +PT  F ++TV Y+N+   V D+GG+  IRP        T  +I+VV + DRDR+G S  E   ML ++ELR A L+VFA+ Q   +    P     +L LP   +     F   AT G G    +EW+
Sbjct:   28 AGKTTIL-YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA-MTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.924e-14
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWV 517
            AG T+ L YR+++ ++VT +PT  F ++TV Y+N+   V D+GG+  IRP        T  +I+VV + DRDR+G S  E   ML ++ELR A L+VFA+ Q   +    P     +L LP   +     F   AT G G    +EW+
Sbjct:   28 AGKTTIL-YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA-MTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.924e-14
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   89 STLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            STL Y+++L D+V+ +PT  F ++T+EY+N++  V DVGG+  IRPL  H    ++ +IFVV + DR+R+ E   E   +L  DEL+   +LVFA+ Q  +         + SL L    +       C A   +G Y   +WV+    N
Sbjct:   39 STLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNT-AEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNN 187          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARF4_ARATH2.826e-1737.43Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_DROME1.402e-1640.00ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF2_SCHPO1.187e-1538.41Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARD1_MOUSE2.645e-1536.67GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN2.645e-1536.67GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARL1_BOVIN1.313e-1437.84ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARD1_RAT2.239e-1436.00GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL1_RAT2.924e-1437.16ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE2.924e-1437.16ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARFJ_DICDI2.924e-1434.67ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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