DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.819e-14
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AG T+ L YR+++ ++VT +PT  F ++ VEY+N+   V D+GG+  IRP        T  +I+VV + DRDRVG S  E   ML +DEL+ A L V A+ Q  + C         +L L    N T   F   A+ GEG    ++W++
Sbjct:   27 AGKTTIL-YRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGC-LTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLA 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWV 517
            AG T+ L YR+++ ++VT +PT  F ++TV Y+N+   V D+GG+  IRP        T  +I+VV + DRDR+G S  E   ML ++ELR A L+VFA+ Q   +   +      SL LP   +     F   AT G G    +EW+
Sbjct:   28 AGKTTIL-YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS-EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.508e-14
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS--SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AG T+ L YR+++ ++V+ +PT  F ++TV+Y NI   V D+GG+  IRP        T  +I+VV + D DR+G +  E H +L +DEL+ A +L+FA+ Q    +   AA      +L L    +     F  CA  GEG +  L+W+S
Sbjct:   28 AGKTTIL-YRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTE---ALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.475e-13
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS--SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AG T+ L YR+++ ++V+ +PT  F ++TV+Y NI   V D+GG+  IRP        T  +I+VV + D DR+G +  E H +L ++EL+ A +L+FA+ Q    +   AA      +L L    +     F  CA  GEG +  L+W+S
Sbjct:   28 AGKTTIL-YRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTE---ALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 75.0998 bits (183), Expect = 7.203e-13
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AG T+ L YR+++ ++VT +PT  F ++ V Y+N+   V D+GG+  IRP        T  +I+VV + DRDR+G S  E   ML ++EL  A L+V A+ Q    C         +L L    N T   F   AT GEG    ++W+S
Sbjct:   27 AGKTTIL-YRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTV-AEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLS 173          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 2.737e-12
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*Q 379
            AG T+ L YR+++ ++VT  PT  F ++T+ Y+N+   V D+GG+  IRP        T  +IFVV + D+DR+  +  E H ML ++EL+DA LLVFA+ Q
Sbjct:   29 AGKTTIL-YRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQ 129          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.575e-12
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 2
Query:   89 STLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*Q 379
            STL Y+++L DIV+ VPT  F ++T+EY+N++  V DVGG+  IR L  H    T+ +IFVV + DR+R+ E   E   +L  +EL+   +L+FA+ Q
Sbjct:   39 STLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQ 136          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.358e-11
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 2
Query:   89 STLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            STL ++++L D+V  +PT  F ++T+ Y+N++  V DVGG+  IR L  H    T+ +IFVV + DR+R+ E   E   +L  DEL+   +LV A+ Q  +         + SL L    +       C A   +G Y   +WV+    N
Sbjct:   39 STLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNT-AEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNN 187          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.774e-11
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 2
Query:   77 AGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSC--CATSGEGHY*VLEWVSQ 523
            AG T+ L Y+++L + V  +PT  F ++TV +Q I   V DVGG++ IR L  +    T  L+FVV + D +R+ E+  E   +L + EL D+ LLVFA+ Q     R+      ++ +L L       +F C   A SG+G Y  L WV +
Sbjct:   28 AGKTTIL-YKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSP---AELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKK 175          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARL1_CAEEL3.819e-1436.91ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARL1_HUMAN4.988e-1437.16ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARF3_ARATH8.508e-1435.76ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP2.475e-1335.10ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_DROME7.203e-1336.24ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARL1_YEAST2.737e-1242.16ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARFH_DICDI3.575e-1242.86ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARFK_DICDI1.358e-1132.67ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARF11_CAEEL1.774e-1135.53ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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