DY271153

Overview
NameDY271153
Unique NameDY271153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271153_ssr368 microsatellite DY271153_ssr368:368..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig541 contig Ccv1_Contig541:21..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.370e-38
Identity = 76/152 (50.00%), Postives = 105/152 (69.08%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 509
            G R  TR +F+RPFRK G +PL+TY+R Y+ GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 509
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +    QP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 509
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KR    P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.673e-34
Identity = 73/164 (44.51%), Postives = 104/164 (63.41%), Query Frame = 3
Query:   45 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRK-------KKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYD 509
            MP  +G   RTR LF RPFR  G    ST L TYK+GDYV +  N ++  G+P+K +HG+TGRVWNV   AIGV +NK+V NRI+ KR+H+  EH++PS C ++F  RK       K+N +LK + K     +  KR PK P+P  +++GA ++  TV P+ ++
Sbjct:    1 MPLSNGRNRRTRKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPL-LPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFE 163          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = 3
Query:   45 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGE-VISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 515
            M    GLR  TR +FAR FRK G   LSTY   YK GD VD+K NGA  KGMP K YHGRTGR++NVT+ A+G+ +NK+V   I+ KRI++R+EH++PS+C  +F  R K NDE +  AK+ G+ V + KR P  P+    V  +    E + P+ +++V
Sbjct:    1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIV 160          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.123e-32
Identity = 68/147 (46.26%), Postives = 101/147 (68.71%), Query Frame = 3
Query:   72 RTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPG-FMVEGATLETVTPIPYD 509
            R  D+F++ FR++G IPL+ YL  YK GD VD+K +G+V K  PHK YHG+TGR++NVT+ A+G+ +NKQV  RII KRI+VR+EH++ S+    F  R  +N+  + +A+ +   ++ KRQP+ P+ G F+   A  E V PIPY+
Sbjct:    9 RGSDMFSKKFRERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIRVNLKRQPQQPRTGHFVRSSAEPELVEPIPYE 155          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 63/132 (47.73%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVIS-TKRQPKGPK 452
            G R  TR LF++  RK G   +S YL  Y+IGD VD+ VN A+ KGMPHK+YHGRTGRV++V  R++ V + K+V  + + K+I VR+EHV+ SRC+EE + R     E+  DA++RG V++ +KR+ +GP+
Sbjct:    5 GYRRGTRYLFSQDHRKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLAPSKRKIEGPR 136          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_PIG (60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTG 230
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KG+PHK YHG+TG
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGLPHKCYHGKTG 62          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_STAMF (50S ribosomal protein L21e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl21e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   51 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 344
            A  G R RTR +F++  R+KG +P LS  +  YK GD V + VN A+HKGMPH+ YHG+TG +  + KR     +   +G++  +K + +R EH++P++
Sbjct:    4 APRGYRHRTRKVFSKHIREKGAVPPLSLLMIDYKPGDKVHIVVNPAIHKGMPHRRYHGKTGTI--IGKRGKAYIVKITLGDK--EKTLFIRPEHLRPAK 98          
BLAST of DY271153 vs. ExPASy Swiss-Prot
Match: RL21_SULAC (50S ribosomal protein L21e OS=Sulfolobus acidocaldarius GN=rpl21e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   60 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 338
            G RS+TR L  +  R+KG IP LS  +  Y  G+YV VK+N ++HKGMPH+ YHG+ G V  V KR    E+   +G++  ++ + VR EH+ P
Sbjct:    7 GYRSKTRKLLEKKVREKGAIPKLSLLMHDYSQGEYVVVKINPSIHKGMPHRRYHGKVGLV--VGKRGKAYEVKVNIGDK--ERVLIVRPEHLIP 96          
The following BLAST results are available for this feature:
BLAST of DY271153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL21_CAPHI1.370e-3850.0060S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_RAT1.514e-3749.3460S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]
RL21_MOUSE1.978e-3749.3460S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]
RL21_ENTHI2.673e-3444.5160S ribosomal protein L21 OS=Entamoeba histolytica... [more]
RL21_CAEEL3.491e-3446.8860S ribosomal protein L21 OS=Caenorhabditis elegan... [more]
RL21_PYUST1.123e-3246.2660S ribosomal protein L21 (Fragment) OS=Pyura stol... [more]
RL21_ENCCU1.421e-2747.7360S ribosomal protein L21 OS=Encephalitozoon cunic... [more]
RL21_PIG1.801e-1461.4060S ribosomal protein L21 (Fragment) OS=Sus scrofa... [more]
RL21_STAMF1.992e-1340.4050S ribosomal protein L21e OS=Staphylothermus mari... [more]
RL21_SULAC5.795e-1343.6250S ribosomal protein L21e OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271153 ID=DY271153; Name=DY271153; organism=Citrus clementina; type=EST; length=742bp
CTTTCCTCTTCTCCAGAGAGAAAAAAGGAGCAGAGTACTCAAACATGCCG
GCAGGTCACGGTTTGAGGTCCCGAACAAGGGATTTGTTCGCACGCCCCTT
CAGAAAGAAGGGTTACATCCCCTTGTCCACTTACCTTAGGACTTACAAAA
TCGGCGACTACGTTGACGTCAAAGTGAACGGCGCCGTTCACAAAGGTATG
CCCCACAAGTTCTACCATGGGCGTACAGGCCGTGTCTGGAATGTCACCAA
GCGCGCCATCGGCGTGGAGATTAACAAGCAGGTTGGTAACAGGATCATCA
AGAAGAGGATTCATGTTCGTGTGGAGCATGTTCAACCTTCAAGGTGTACC
GAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCAGATGC
TAAGGCAAGAGGTGAGGTCATCAGTACAAAGAGGCAGCCAAAGGGCCCTA
AACCAGGTTTCATGGTGGAAGGTGCAACATTGGAAACTGTCACTCCTATT
CCTTATGATGTCGTCAATGATCTTAAGGGTGGTTACTACGTTATCTTTTT
GGTATTGTTGCTGTTTTGTTACTTGTTGCAGACTTTTCTGGACATGGTCT
TATTTGGATGTATTTTCATCCTTATTAGTTTTGTTTTTGAGAGGAACTGC
AATTGCAGAGATGTTTATTTTAATCCTCCTTTTAAATAAAAACAAAAGAA
GTTTTCCGAAAAAAAAAAAAAAAAAAAACCCACTTTCCTGGA
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