DY271156

Overview
NameDY271156
Unique NameDY271156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 2 
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            +SK VSRS +AGLQFPVGRI+RFLK G+Y+ERVG GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   16 SSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 70/114 (61.40%), Postives = 79/114 (69.30%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKG 457
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK     G
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVG 126
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 70/113 (61.95%), Postives = 79/113 (69.91%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 454
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQK 125
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 70/113 (61.95%), Postives = 79/113 (69.91%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 454
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQK 125
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 2 
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            A  S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   12 AKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 439
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 439
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 439
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 439
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A1_LODEL (Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 68/109 (62.39%), Postives = 79/109 (72.48%), Query Frame = 2 
Query:  122 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 448
            S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K
Sbjct:   15 STSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAK 123
The following BLAST results are available for this feature:
BLAST of DY271156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_TETTH1.204e-3159.35Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AX_HUMAN1.204e-3161.40Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2AJ_RAT1.204e-3161.95Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE1.204e-3161.95Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2A2_ASHGO1.204e-3158.54Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A2A_RAT1.204e-3163.89Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2... [more]
H2A2A_MOUSE1.204e-3163.89Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1... [more]
H2A2A_HUMAN1.204e-3163.89Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3... [more]
H2A1_RAT1.204e-3163.89Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A1_LODEL1.204e-3162.39Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271156 ID=DY271156; Name=DY271156; organism=Citrus clementina; type=EST; length=729bp
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTAT
GAGTTTTTTTCTTATGGTAACAGAGATTGCATTTGCTAATCTTTTTCACT
ATGTGTAACTTAATGAGATTATTCCATTGCTTTCCACATGTTATTTGTTA
TCGAACAATATAGAACCTAGATTAATTCTCCTGATAGGGCATTCTCTATT
GAATCAATACAAGAGCCAATAGATCTTCC
back to top