DY271156

Overview
NameDY271156
Unique NameDY271156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9629 contig Ccv1_Contig9629:55..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  119 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQ 478
            K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +     G  ++
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  119 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQ 478
            K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +     G  ++
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 71/108 (65.74%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  116 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 439
            SK+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   12 SKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  119 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 445
            K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 73/123 (59.35%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            A  S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K       ASQE
Sbjct:   13 AKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----TAKASQE 131          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 73/123 (59.35%), Postives = 86/123 (69.92%), Query Frame = 2
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            A  S +RS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K      SASQE
Sbjct:   13 AKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 73/123 (59.35%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            A  S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K       ASQE
Sbjct:   13 AKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT----KASQE 131          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.426e-32
Identity = 73/123 (59.35%), Postives = 86/123 (69.92%), Query Frame = 2
Query:  113 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 481
            A  S +RS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K      SASQE
Sbjct:   13 AKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 76/121 (62.81%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  122 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKG-KGDIGSASQE 481
            S SRS KA L FPVGR+ R L+ G YA+R+GAGAP                  GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLP+K  KG KG    ASQE
Sbjct:   18 SKSRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAKG----ASQE 134          
BLAST of DY271156 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 2
Query:  119 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 445
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
The following BLAST results are available for this feature:
BLAST of DY271156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A5_ORYSJ2.426e-3258.33Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI2.426e-3258.33Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A4_PSAMI2.426e-3265.74Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A3_PSAMI2.426e-3264.22Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A2_YEAST2.426e-3259.35Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]
H2A2_CANGA2.426e-3259.35Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_YEAST2.426e-3259.35Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A1_CANGA2.426e-3259.35Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A_YARLI3.169e-3262.81Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A4_ORYSJ3.169e-3263.30Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271156 ID=DY271156; Name=DY271156; organism=Citrus clementina; type=EST; length=729bp
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTAT
GAGTTTTTTTCTTATGGTAACAGAGATTGCATTTGCTAATCTTTTTCACT
ATGTGTAACTTAATGAGATTATTCCATTGCTTTCCACATGTTATTTGTTA
TCGAACAATATAGAACCTAGATTAATTCTCCTGATAGGGCATTCTCTATT
GAATCAATACAAGAGCCAATAGATCTTCC
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