DY271171

Overview
NameDY271171
Unique NameDY271171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_ENT38 (Histidine ammonia-lyase OS=Enterobacter sp. (strain 638) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.109e-26
Identity = 75/232 (32.33%), Postives = 125/232 (53.88%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            LT+ Q+  +    T + L E+A E +  S   V   + +   +YG+ TGFG  +  R  T +   LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  +++A+  L+N  + P +P +G++ ASGDL PL++++ LL G   ++     GE + A++A K+AG     L  KEGLAL+NGT   +  A  GLFEA +    + +  A+  E + G
Sbjct:   11 LTLKQLRGVWRHPTPLVLDENAHEAINQSVACVEAIVAEDRTAYGINTGFGLLAQTRIATHDLENLQRSLVLSHAAGV-------GAPLDDNMVRLMMVLKINSLARGFSGIRLSVIQALIALVNAQVYPWIPSKGSVGASGDLAPLAHMSLLLLGEGKARW---QGEWLPAKDALKKAGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SYMTH (Histidine ammonia-lyase OS=Symbiobacterium thermophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.009e-26
Identity = 82/248 (33.06%), Postives = 123/248 (49.60%), Query Frame = 1
Query:    1 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKLK 738
            G  LT+ +V A+A     V L+   R+ V  +S+ V   + +    YG+TTGFG  S      +   ALQ+ L+      +          L     RA +L+R   L +G+SGIR E LE +   LN  +TP +P +G++ ASGDL PL++++  L G   +     NGE +   EA ++ G     L  KEGLAL+NGT   + L S+GL +A      ++I +A+ AE L   P    P    L+
Sbjct:    7 GAHLTLPEVVAVARHGARVVLTPEVRQRVARASEMVERLVRERRPVYGITTGFGKFSDVPISAEQTEALQRNLLMSHACAV-------GEPLAAEVVRAMLLLRAQALSRGHSGIRAETLEMLVAFLNLGLTPVVPEQGSLGASGDLAPLAHMSLPLIGLGEAVV---NGERLSGAEALQRVGLRPLTLTAKEGLALINGTQAMTALGSLGLHDAQVLLKTADIAAAMTAEALGAIPAAWDPRVQALR 244          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALAR (Histidine ammonia-lyase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hutH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.009e-26
Identity = 75/232 (32.33%), Postives = 123/232 (53.02%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  I      + L  SA + + AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLHDIWRHPVQICLDASAIDSINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_VIBFM (Histidine ammonia-lyase OS=Vibrio fischeri (strain MJ11) GN=hutH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.154e-26
Identity = 73/244 (29.92%), Postives = 130/244 (53.28%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKL 735
            L++ Q+  ++   T + L  +A   +  S+D V + + +    YG+ TGFG  ++ R   K+   LQ+ ++    AGI          +  +  R  +++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++      +II  +EA   AG     L PKEGLAL+NGT   +  A  GLF A +    + +  A+  E   G     +P  P++
Sbjct:   11 LSLKQLREVSRHPTKLSLDPNALPDMLISADVVAQVIKEDKTVYGINTGFGLLANTRIAEKDLETLQRSIVLSHAAGI-------GEFMDDATVRLMIILKINSLSRGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEARY---QDKIISGKEALDIAGLTPITLAPKEGLALLNGTQASTAFALEGLFAAEDLYASATVCGAMSVEAALGS---RKPFDPRI 241          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_THEAC (Probable histidine ammonia-lyase OS=Thermoplasma acidophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.154e-26
Identity = 77/243 (31.69%), Postives = 130/243 (53.50%), Query Frame = 1
Query:    1 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA--TSHRRTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFA-EVLQGKPEFHQP 720
            G +L V  V A+A     V +S+   + V+   +  ++ +N G   YGV TGFG+    H        LQK LIR  ++G+          L +   RA M VR+N+L  GYS +  ++L  + ++LN ++ P +P  G++ ASGDL PL++I   + G   +      G ++D+  A ++AG   ++ + KEG+AL+NGT+  SG+ S+ + +A++  L + I SA+ + E L G  +   P
Sbjct:    6 GRSLRVEDVYAVAVEYDRVSISDDTLKAVEEKHEAFLKLINSGKTVYGVNTGFGSLLNVHIERDQEIELQKNLIRSHSSGV-------GDYLENRYVRAIMAVRLNSLAAGYSAVSADLLNMMVEMLNRDVIPAVPKYGSVGASGDLAPLAHIGLAMMGEGKAFF---EGRLMDSARALEKAGLKPYQFKEKEGVALINGTSFMSGILSIAVMDAHD-ILENAIRSALLSFEALGGTSKAFTP 237          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAB (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hutH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.154e-26
Identity = 76/232 (32.76%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            LT+A +     +   + L  SA   V AS   V   + +G  +YG+ TGFG  +  R        LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A  GLFEA +    + +   +  E + G
Sbjct:   10 LTLADLRQAYLAPVRLSLDPSADAPVAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLG 231          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_TREDE (Histidine ammonia-lyase OS=Treponema denticola GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.196e-25
Identity = 76/249 (30.52%), Postives = 130/249 (52.21%), Query Frame = 1
Query:    1 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR-TKN-GGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKLKP 741
            G +LT+  V A+A     V+LS  A++ +K S   V + +  G  +YG++TGFG  S    TK+  GALQ+ LI     G+        +  P    RA ML+R+NT   G+SG+   + + +  +LN  + P +P +G++ ASGDL  L++IA ++ G   +      G++++ + A  +AG     L  K+GL ++NGT V SG+ ++ L +A      + + +++  E  +G      P   K +P
Sbjct:   10 GSSLTIEDVVAVARHGAEVKLSADAKKRIKDSKKIVDDIVKSGKPTYGISTGFGELSTVTITKDQNGALQRNLILSHACGV-------GNPFPEDIVRAIMLLRLNTHASGFSGVTPSVPDILVDMLNKGVIPYVPEKGSLGASGDLANLAHIALVMIGEGKAYY---EGKLMEGKAALAKAGLKPVVLSGKDGLGIINGTPVMSGIGALALHDAEQLLKAANMGASLVFEAFRGITAALDPRIHKSRP 248          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAE (Histidine ammonia-lyase OS=Pseudomonas aeruginosa GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.196e-25
Identity = 75/232 (32.33%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            LT+A +     +   + L  SA   + AS   V   + +G  +YG+ TGFG  +  R        LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A  GLFEA +    + +   +  E + G
Sbjct:   10 LTLADLRQAYLAPVRLSLDPSADAPIAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLG 231          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA8 (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.196e-25
Identity = 75/232 (32.33%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            LT+A +     +   + L  SA   + AS   V   + +G  +YG+ TGFG  +  R        LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A  GLFEA +    + +   +  E + G
Sbjct:   10 LTLADLRQAYLAPVRLSLDPSADAPIAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLG 231          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_BACSU (Histidine ammonia-lyase OS=Bacillus subtilis GN=hutH PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.561e-25
Identity = 80/235 (34.04%), Postives = 117/235 (49.79%), Query Frame = 1
Query:    1 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            G +LT A VA +         SE + E VK S   V   +      YG+ TGFG  S    + ++  ALQ  LI     G+           P   +RA +L+R N LL+G+SG+R E++E +   LN  + P +P +G++ ASGDL PLS++A  L G+         GE + A    K+AG     L  KEGLAL+NGT   + +  +   EA   A  +E ++++  E LQG
Sbjct:    6 GSSLTTADVARVLFDFEEAAASEESMERVKKSRAAVERIVRDEKTIYGINTGFGKFSDVLIQKEDSAALQLNLILSHACGV-------GDPFPECVSRAMLLLRANALLKGFSGVRAELIEQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALALIGQGE---VFFEGERMPAMTGLKKAGIQPVTLTSKEGLALINGTQAMTAMGVVAYIEAEKLAYQTERIASLTIEGLQG 230          
The following BLAST results are available for this feature:
BLAST of DY271171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_ENT384.109e-2632.33Histidine ammonia-lyase OS=Enterobacter sp. (strai... [more]
HUTH_SYMTH7.009e-2633.06Histidine ammonia-lyase OS=Symbiobacterium thermop... [more]
HUTH_SALAR7.009e-2632.33Histidine ammonia-lyase OS=Salmonella arizonae (st... [more]
HUTH_VIBFM9.154e-2629.92Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_THEAC9.154e-2631.69Probable histidine ammonia-lyase OS=Thermoplasma a... [more]
HUTH_PSEAB9.154e-2632.76Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_TREDE1.196e-2530.52Histidine ammonia-lyase OS=Treponema denticola GN=... [more]
HUTH_PSEAE1.196e-2532.33Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEA81.196e-2532.33Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_BACSU1.561e-2534.04Histidine ammonia-lyase OS=Bacillus subtilis GN=hu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271171 ID=DY271171; Name=DY271171; organism=Citrus clementina; type=EST; length=968bp
GGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTAC
GAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTG
ATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACC
ACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCT
TCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACTGAA
CAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGCCATGCTT
GTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGATTTGAAAT
CCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCC
CTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTAC
ATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAAGGCCACCGGGCCTAA
TGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGTTTCGGGT
TCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAATGGCACTGCT
GTTGGTTCTGGCCTGGCTTCTATGGGTCTGTTTGAGGCTAACAACCCTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCCTGCAAGGCA
AACCGGAGTTCCACCAACCCTTGACACCCAAATTGAAACCACCATCCTGG
CCAAATTGAGGCTGCTGCCAAAAAGGAACCTATCCCCCAGGGGACCCCTT
ATTTTAACGTGGCCAAAAATTTGCCTGAAATTTAACCCCTGCCAAAACCC
AAAAAGAAACGTTAGCCCCGGAAATTCCCCCCAAAGGGCCCCCCCCCCAA
AAAAAGTGATCCGTTTTGCCCCCTTCTATTGAAACGGAAAACCCCCCGGG
AAAAAAAAACCCCCCGAA
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