DY271171

Overview
NameDY271171
Unique NameDY271171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPL (Histidine ammonia-lyase OS=Legionella pneumophila (strain Lens) GN=hutH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.854e-27
Identity = 74/208 (35.58%), Postives = 118/208 (56.73%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLF 633
            L++  +  I     +  L+ESA E + AS   V + +++    YG+ TGFG+ +++ T +   L KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF
Sbjct:   12 LSLLSIKQILDEGQSCVLAESAFELINASHQTVRKVIDEKKTVYGINTGFGSLANQ-TISADCL-KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQLISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALF 211          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPC (Histidine ammonia-lyase OS=Legionella pneumophila (strain Corby) GN=hutH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.854e-27
Identity = 71/208 (34.13%), Postives = 117/208 (56.25%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLF 633
            L++  +  I     +  L+E+A E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF
Sbjct:   12 LSLLSIKQILDEELSCVLAENAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALF 211          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVY (Histidine ammonia-lyase OS=Vibrio vulnificus (strain YJ016) GN=hutH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.339e-27
Identity = 76/244 (31.15%), Postives = 129/244 (52.87%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKL 735
            L++ Q+  ++ S  N+ L  SA   ++ S+  V   + +    YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL+NGT   +  A  GLF A +    + +  A+  E   G     +P  P++
Sbjct:   13 LSLNQLRQVSRSPINLSLDASAIPAIEDSTQVVERVIAEDRTVYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGKIISGLEALKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFIAEDLFASATVCGAMSVEAALGS---RRPFDPRI 243          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_MYXXD (Histidine ammonia-lyase OS=Myxococcus xanthus (strain DK 1622) GN=hutH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.339e-27
Identity = 83/247 (33.60%), Postives = 129/247 (52.23%), Query Frame = 1
Query:    1 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKL 735
            G+TL + ++  +A +   VELS  A   V+AS   V       T +YG+ TGFG  +  R   K+   LQ+ LI     G+          LP    RA +L+R N L +GYSGIR E L     +LN ++ P +P RG++ ASGDL PL+++A +  G   +      G+ + A++A ++AG     L+ KEGLALVNGT     + ++    A + A ++++  A+  E L G    H+P  P++
Sbjct:   10 GDTLKLEEILQVARNEATVELSPDAATRVRASRALVDRVAAGDTPAYGINTGFGTLAEVRIDKKDLRDLQRNLILSHACGV-------GTPLPLPEARALLLLRCNVLAKGYSGIRMETLALALDMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIGEGEAFY---QGQRMPAKQALERAGLQPVVLEAKEGLALVNGTQAMCAVGTLLQLRAESLADIADVAGAMTLEGLLGS---HKPFIPEI 243          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALTY (Histidine ammonia-lyase OS=Salmonella typhimurium GN=hutH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 76/232 (32.76%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALPB (Histidine ammonia-lyase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hutH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 76/232 (32.76%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SHEON (Histidine ammonia-lyase OS=Shewanella oneidensis GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 74/245 (30.20%), Postives = 129/245 (52.65%), Query Frame = 1
Query:    7 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQGKPEFHQPLTPKL 735
            +L++AQ+  I+     +EL+  A   +  S+  V + +++G   YG+ TGFG  ++ +   ++   LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G          G+II A E  + AG    +L  KEGLAL+NGT   + LA  GLF A +    S ++ A+  E   G      P  P++
Sbjct:   13 SLSLAQLREISRHKLTLELAPEAINDINISAQIVQKVLDEGRTVYGINTGFGLLANTKIAPEDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLISLVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLGEGEMSY---QGQIISAAEGLEIAGLKPIDLAAKEGLALLNGTQASTALALEGLFHAEDLFAASSVIGAMSVEAAMGS---RSPFDPRI 244          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALTI (Histidine ammonia-lyase OS=Salmonella typhi GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALSV (Histidine ammonia-lyase OS=Salmonella schwarzengrund (strain CVM19633) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALPK (Histidine ammonia-lyase OS=Salmonella paratyphi A (strain AKU_12601) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
The following BLAST results are available for this feature:
BLAST of DY271171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_LEGPL4.854e-2735.58Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPC4.854e-2734.13Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_VIBVY6.339e-2731.15Histidine ammonia-lyase OS=Vibrio vulnificus (stra... [more]
HUTH_MYXXD6.339e-2733.60Histidine ammonia-lyase OS=Myxococcus xanthus (str... [more]
HUTH_SALTY8.279e-2732.76Histidine ammonia-lyase OS=Salmonella typhimurium ... [more]
HUTH_SALPB8.279e-2732.76Histidine ammonia-lyase OS=Salmonella paratyphi B ... [more]
HUTH_SHEON1.081e-2630.20Histidine ammonia-lyase OS=Shewanella oneidensis G... [more]
HUTH_SALTI1.081e-2632.33Histidine ammonia-lyase OS=Salmonella typhi GN=hut... [more]
HUTH_SALSV1.081e-2632.33Histidine ammonia-lyase OS=Salmonella schwarzengru... [more]
HUTH_SALPK1.081e-2632.33Histidine ammonia-lyase OS=Salmonella paratyphi A ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271171 ID=DY271171; Name=DY271171; organism=Citrus clementina; type=EST; length=968bp
GGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTAC
GAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTG
ATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACC
ACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCT
TCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACTGAA
CAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGCCATGCTT
GTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGATTTGAAAT
CCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCC
CTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTAC
ATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAAGGCCACCGGGCCTAA
TGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGTTTCGGGT
TCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAATGGCACTGCT
GTTGGTTCTGGCCTGGCTTCTATGGGTCTGTTTGAGGCTAACAACCCTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCCTGCAAGGCA
AACCGGAGTTCCACCAACCCTTGACACCCAAATTGAAACCACCATCCTGG
CCAAATTGAGGCTGCTGCCAAAAAGGAACCTATCCCCCAGGGGACCCCTT
ATTTTAACGTGGCCAAAAATTTGCCTGAAATTTAACCCCTGCCAAAACCC
AAAAAGAAACGTTAGCCCCGGAAATTCCCCCCAAAGGGCCCCCCCCCCAA
AAAAAGTGATCCGTTTTGCCCCCTTCTATTGAAACGGAAAACCCCCCGGG
AAAAAAAAACCCCCCGAA
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