DY271171

Overview
NameDY271171
Unique NameDY271171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALPC (Histidine ammonia-lyase OS=Salmonella paratyphi C (strain RKS4594) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALPA (Histidine ammonia-lyase OS=Salmonella paratyphi A GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALNS (Histidine ammonia-lyase OS=Salmonella newport (strain SL254) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALHS (Histidine ammonia-lyase OS=Salmonella heidelberg (strain SL476) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALG2 (Histidine ammonia-lyase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALEP (Histidine ammonia-lyase OS=Salmonella enteritidis PT4 (strain P125109) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALDC (Histidine ammonia-lyase OS=Salmonella dublin (strain CT_02021853) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPH (Histidine ammonia-lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hutH PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 70/208 (33.65%), Postives = 117/208 (56.25%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLF 633
            L++  +  I     +  L+E++ E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF
Sbjct:   12 LSLLSIKQILDEELSCVLAENSFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALF 211          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP7 (Histidine ammonia-lyase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.412e-26
Identity = 74/232 (31.90%), Postives = 123/232 (53.02%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  I +   N+ L   A   +  S   V   + +G  +YG+ TGFG  +  R  T++   LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G   ++  G  G+ + A EA +Q G     L  KEGLAL+NGT   +  A  GLFEA +    + +  A+  E   G
Sbjct:   11 LSLSQLRDIYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRG--GDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALG 233          
BLAST of DY271171 vs. ExPASy Swiss-Prot
Match: HUTH_SALCH (Histidine ammonia-lyase OS=Salmonella choleraesuis GN=hutH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.844e-26
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:   10 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGN*TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMGLFEANNPALLSEILSAIFAEVLQG 699
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++ +L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A  GLFEA      + +  A+  E + G
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGCSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLMLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLG 232          
The following BLAST results are available for this feature:
BLAST of DY271171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_SALPC1.081e-2632.33Histidine ammonia-lyase OS=Salmonella paratyphi C ... [more]
HUTH_SALPA1.081e-2632.33Histidine ammonia-lyase OS=Salmonella paratyphi A ... [more]
HUTH_SALNS1.081e-2632.33Histidine ammonia-lyase OS=Salmonella newport (str... [more]
HUTH_SALHS1.081e-2632.33Histidine ammonia-lyase OS=Salmonella heidelberg (... [more]
HUTH_SALG21.081e-2632.33Histidine ammonia-lyase OS=Salmonella gallinarum (... [more]
HUTH_SALEP1.081e-2632.33Histidine ammonia-lyase OS=Salmonella enteritidis ... [more]
HUTH_SALDC1.081e-2632.33Histidine ammonia-lyase OS=Salmonella dublin (stra... [more]
HUTH_LEGPH1.081e-2633.65Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_KLEP71.412e-2631.90Histidine ammonia-lyase OS=Klebsiella pneumoniae s... [more]
HUTH_SALCH1.844e-2632.33Histidine ammonia-lyase OS=Salmonella choleraesuis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271171 ID=DY271171; Name=DY271171; organism=Citrus clementina; type=EST; length=968bp
GGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTAC
GAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTG
ATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACC
ACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCT
TCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACTGAA
CAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGCCATGCTT
GTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGATTTGAAAT
CCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCC
CTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTAC
ATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAAGGCCACCGGGCCTAA
TGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGTTTCGGGT
TCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAATGGCACTGCT
GTTGGTTCTGGCCTGGCTTCTATGGGTCTGTTTGAGGCTAACAACCCTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCCTGCAAGGCA
AACCGGAGTTCCACCAACCCTTGACACCCAAATTGAAACCACCATCCTGG
CCAAATTGAGGCTGCTGCCAAAAAGGAACCTATCCCCCAGGGGACCCCTT
ATTTTAACGTGGCCAAAAATTTGCCTGAAATTTAACCCCTGCCAAAACCC
AAAAAGAAACGTTAGCCCCGGAAATTCCCCCCAAAGGGCCCCCCCCCCAA
AAAAAGTGATCCGTTTTGCCCCCTTCTATTGAAACGGAAAACCCCCCGGG
AAAAAAAAACCCCCCGAA
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