DY271182

Overview
NameDY271182
Unique NameDY271182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_PYRKO (50S ribosomal protein L11P OS=Pyrococcus kodakaraensis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.645e-20
Identity = 60/158 (37.97%), Postives = 98/158 (62.03%), Query Frame = 1
Query:   40 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            +QVV+V V   GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P    K +    H   GN+T++ VI+IAK+   + +A +L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:    2 AQVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIP----KGSSEAGHTPAGNLTMEQVIKIAKMKIDQMLAPNLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METJA (50S ribosomal protein L11P OS=Methanocaldococcus jannaschii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.149e-20
Identity = 58/150 (38.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V V VTGG   A   L P IGPLG++  ++ ++I ++T KD++G++V VK+ V     K  +   +P   AL+ K L       +    +   GN+TL+ VI+IAK+ +   ++  L   VKE+LGTC S+G TV+GKDP+++Q+EI  G
Sbjct:    6 VEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKT-KDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVV--GNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_THEAC (50S ribosomal protein L11P OS=Thermoplasma acidophilum GN=rpl11p PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.807e-20
Identity = 55/155 (35.48%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 507
            V   V GG+      + P +GPLGL+  ++ ++I ++T K+++G+RV V +TV + + K       +P  +AL+ K L   +   K+ + I   GN TLD ++++AK      +A DL     E+LGTCVS+G  VDGKDP+++Q++I  G++ I
Sbjct:    5 VKTMVEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMRVPVTITVVDPETKKYEITVGIPPTSALLKKKLGIEKGAAKRKEAIA--GNATLDQIVDVAKTKMASMLASDLKAATLEVLGTCVSMGINVDGKDPKEVQRQIKAGEISI 156          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_PYRAB (50S ribosomal protein L11P OS=Pyrococcus abyssi GN=rpl11p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.788e-20
Identity = 63/156 (40.38%), Postives = 96/156 (61.54%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:    4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_THEGJ (50S ribosomal protein L11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.166e-20
Identity = 58/155 (37.42%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            QVV+V V   GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P+   +   +    GN+T++ VI+IAK+   + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:    3 QVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIPKGSSEPVHSPV--GNLTMEQVIKIAKMKIDQMLAPTLKAASKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_PYRHO (50S ribosomal protein L11P OS=Pyrococcus horikoshii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.393e-19
Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDPR +Q+EI +G
Sbjct:    4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRSQMLALTLKAAAKEVIGTALSMGVTVEGKDPRIVQREIDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METVS (50S ribosomal protein L11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.540e-18
Identity = 55/157 (35.03%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            QVV++ V  TGG+  A   L P IGPLG++  ++ + I  +T KD++G+ V VK+ V+  +    V   +P A+AL+ K L      ++    +   GNIT++ +++IAK+ +   +A  L    KE++GTCVSVG  V+GK P++ Q+ +  G+ +
Sbjct:    4 QVVEILV--TGGKATAGPPLGPAIGPLGVNIMQVVQMINTKT-KDYEGMSVPVKVIVETTKRTFEVEVGIPPASALIKKELGLESGSQEPKHKVA--GNITMEKIVKIAKMKQDAMLAYTLKSAAKEVIGTCVSVGVNVEGKTPKEAQKAVDAGEFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METKA (50S ribosomal protein L11P OS=Methanopyrus kandleri GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.011e-18
Identity = 53/150 (35.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   52 DVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            +V V + GG+      L P +GPLG++ +++ E+I ++T KD+KG+ V VK+ V  + R+ +V V     + +IK+    ++   + ++ +  G+++++ VI+IAK+     ++ DL    KEILGTC S+G TV+GKDP+++Q+EI +G
Sbjct:    5 EVEVLIEGGKADPGPPLGPALGPLGVNIQEVVEEINRKT-KDFKGMEVPVKIIVDTETREFEVKVGSPPTSAIIKSELGIDKGAHEPRH-ETVGDLSMEQVIKIAKMKFDDLLSYDLKTAAKEILGTCGSMGVTVEGKDPKEVQKEIDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_THEVO (50S ribosomal protein L11P OS=Thermoplasma volcanium GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 54/155 (34.84%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 507
            V   V GG+      + P +GPLGL+  ++ ++I ++T K+++G++V V +TV + + K       VP  +AL+ K L   +   KK + +   GN TL+ +  +A    P  +AKDL   V E+LGTCV++G  V+GKDP+++Q+ I  G ++I
Sbjct:    5 VKTMVEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMQVPVTVTVIDPETKKYEITVGVPPTSALLKKELGLEKGASKKKEAVA--GNATLEQIKNVAIKKMPSMLAKDLKSAVLEVLGTCVAMGINVEGKDPKEVQKLIKSGQIKI 156          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_HYPBU (50S ribosomal protein L11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV---PSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + V+V GGE   A  LAP I  LGL   K+ EDI K T K +KG  V VKL V     +  +    P+   L++KA+   EP  D    K     G++  + ++EIA + +P   AK L   VK ILG+  S+G TVDGKDP+ + +E+ +G
Sbjct:    6 INVKVRGGEAKPAPPLAPAIEKLGLDVNKVVEDINKATEK-YKGFEVAVKLIVDENTKEYEIEVKPPTTTELLLKAVGASEPSGDPMHQKI----GDLPFEKIVEIAILKKPSLNAKTLKAAVKTILGSARSIGITVDGKDPKQVTKEVEEG 152          
The following BLAST results are available for this feature:
BLAST of DY271182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_PYRKO1.645e-2037.9750S ribosomal protein L11P OS=Pyrococcus kodakarae... [more]
RL11_METJA2.149e-2038.6750S ribosomal protein L11P OS=Methanocaldococcus j... [more]
RL11_THEAC2.807e-2035.4850S ribosomal protein L11P OS=Thermoplasma acidoph... [more]
RL11_PYRAB4.788e-2040.3850S ribosomal protein L11P OS=Pyrococcus abyssi GN... [more]
RL11_THEGJ8.166e-2037.4250S ribosomal protein L11P OS=Thermococcus gammato... [more]
RL11_PYRHO1.393e-1940.3850S ribosomal protein L11P OS=Pyrococcus horikoshi... [more]
RL11_METVS1.540e-1835.0350S ribosomal protein L11P OS=Methanococcus vannie... [more]
RL11_METKA2.011e-1835.3350S ribosomal protein L11P OS=Methanopyrus kandler... [more]
RL11_THEVO4.481e-1834.8450S ribosomal protein L11P OS=Thermoplasma volcani... [more]
RL11_HYPBU4.481e-1838.8250S ribosomal protein L11P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271182 ID=DY271182; Name=DY271182; organism=Citrus clementina; type=EST; length=1027bp
GTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCCAAGTGGT
GGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCC
TCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCAAAGAAAATCGGAGAG
GACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGT
CAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCG
CCGCCGCCCTGGTGATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAG
AAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCAT
CGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTG
GCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTC
GATGGCAAGGACCCTAGGGACCTGCAGCAGGAGATCACTGATGGTGATGT
CGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGA
TTTTAATTTTTGTTTTTATCTCTATATATCAGTGCCTTTTTTTTTAATTA
TCAGTTTTGGATCTTTACAAGGAATTTAATGATGTCTCCCATTATTCCGA
GCTTTAAACGAGTGCTTTTTTAATTGGAATTTTAGGAAATGTAAGGTTTA
ATTTAGTGGACTTTAGGTTGAATGAAAAAAAAAAAAAAAAAAAAAACCCC
CTCTTTCTTGTAAAAAGTTGGGCATTAAAAAAAAAGCCTTGCCTTACCAT
TTTGTTCGCACGAACCGGGCCCCTTCCCGCCAAAATAAAAACTTTTATTT
CGCGCCCGGCGGAACCCCCCCCAACAGGGGACCTCCAAAACTCGGACCCA
GCTGGTTTCAGGCGCACCTACGGCCCCCGGCCCCAAACCCCCCGAAGCTT
CAACCTTACCACAACCATAAAACAACCCCCCTGTCCACACACCACCCCCC
CTCCCCCCTCACTGCGCATAAACACTT
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