DY271182

Overview
NameDY271182
Unique NameDY271182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_PICTO (50S ribosomal protein L11P OS=Picrophilus torridus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.983e-18
Identity = 55/158 (34.81%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   46 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 507
            +V V   V GG+      L P +GPLGL+  ++ +DI ++T K++ G++V V + V +   K    +  VP  +AL+ K L   +   KK + I   GN TL+ + ++A+  R   ++ ++ G V E+LG+ VS+G TVDG+DP+++Q+ I +G++EI
Sbjct:    1 MVAVKTMVEGGKATTGPPLGPALGPLGLNLGQVVKDINEKT-KNFAGMQVPVTVNVIDPATKKYEIIVGVPPTSALLKKELGIEKGASKKKEKIA--GNATLEQIKKVAESKRSALLSYNMKGAVLEVLGSAVSLGITVDGRDPKEVQKMIKNGEIEI 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METTH (50S ribosomal protein L11P OS=Methanobacterium thermoautotrophicum GN=rpl11p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.304e-17
Identity = 53/150 (35.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN--RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V + + GG+      L P IGPLG++  ++ E+I ++TA D++G++V VK+ V    R  +V V  P   AL++  LK  +  +     +    +I+++ V++IA++     ++ D    VKEI+GTCVS+G TV+GKDPR++Q+E+  G
Sbjct:    6 VEILIDGGKATPGPPLGPAIGPLGINMMQVVEEINRKTA-DFEGMKVPVKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDP--GMDKIADISMEQVLKIARMKFDALLSNDYKRAVKEIMGTCVSMGITVNGKDPREVQREVDQG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METHJ (50S ribosomal protein L11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.304e-17
Identity = 53/150 (35.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ---AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V V V GG+  A   L P +GPLG++ K + ++I K+TA  + G++V V++ V  ++     V + P+ A ++ +A  E       TK +   G++ L+  + IAK+     ++ DL   VKE++GTCVS+G TV GK P+D+ +EI  G
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDEINKKTAS-FNGMQVPVRVEVDEKKNFTISVGIPPTTALIMKEAGVEKGSGEPNTKIV---GDVPLEAAVTIAKMKLDDMLSYDLKNAVKEVVGTCVSLGITVSGKKPKDMLKEIDSG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METMJ (50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.703e-17
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            V V V GG+  A   L P +GPLG++ K + +DI K+TA ++ G++V V +TV +++     V  P   ALV+K     +   +    +   G++ L+  + IA++     ++ DL   VKE+LGTCVSVG TV+GK PR++ Q + +G+ +
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVTVTVDDKKNFTIEVGIPPTTALVMKEAGITKGSTEPGALVA--GDLPLEAAVRIARMKFDGMLSYDLKSAVKEVLGTCVSVGVTVEGKKPREMIQAVNNGEYD 153          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_UNCMA (50S ribosomal protein L11P OS=Uncultured methanogenic archaeon RC-I GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V V V GG+      L P +GPLG++ KK+ ++I  +T KD+ G+ V VK+ V  +R   V V  P  +ALV+  LK  +     T N    G++T++  I++A++ R   ++  L   VKE+ GTCVS+G  ++GK P++   E+  G
Sbjct:    5 VEVLVPGGKANPGPPLGPALGPLGINIKKVVDEINNKT-KDYNGMTVPVKVIVDASRNFTVEVGTPPTSALVLSELKLEKGSG--TPNTNFIGSLTIEQAIKVAQMKRDAMLSYTLKNAVKEVAGTCVSLGVMIEGKKPKEFIAEVNAG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METM7 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METM6 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.471e-17
Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METS5 (50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.451e-17
Identity = 60/154 (38.96%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + V V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V L V     K  V   VP+  +L++K      P  D +  K     GNI++DDVIE+A   +P   AK+L G VK ILGT  S+G TVD KDP+ + +E+ +G
Sbjct:    6 IKVVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINEATSQFKGMTVPVTLDVDTDTKKYEVSVGVPTTTSLLVKKAGASGPSGDPEHKKI----GNISMDDVIEVAISKKPSLTAKELKGAVKSILGTAKSIGLTVDNKDPKLVVREVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METMP (50S ribosomal protein L11P OS=Methanococcus maripaludis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.104e-16
Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I   T KD++G+ V VK+ V   +    V   +P A+AL+ K +       K ++  KH   GNIT++ +++IAK+ +   +A +L    KE++GTCVSVG +V+G  P + Q+ I  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKINNMT-KDYEGMSVPVKVIVDTDKRTFEVEVGIPPASALIKKEIGI----EKGSQEPKHQVAGNITMEQIVKIAKMKQDAMLAYNLKNASKEVVGTCVSVGISVEGMTPSEAQKAIDAGQFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_KORCO (50S ribosomal protein L11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.104e-16
Identity = 50/150 (33.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V V + GG+      L P +G LGL+  +I ++I ++T+  + G+RV V++ V     K  +    P  + L+++ LK  +     +K I   GN+ ++ V+ IAK+    S   +L   VK++LGT +S+G TV+GKDPR++Q+E+  G
Sbjct:    6 VRVLIEGGKATPGPPLGPALGGLGLNMGQIVKEINEKTSS-YSGMRVPVEIEVDTETKKFEIRVGTPPTSMLILRELKAEKGSSDASKKI---GNLKMETVVNIAKMKLASSNTPELKQVVKQVLGTALSMGVTVEGKDPREVQREVDSG 151          
The following BLAST results are available for this feature:
BLAST of DY271182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_PICTO9.983e-1834.8150S ribosomal protein L11P OS=Picrophilus torridus... [more]
RL11_METTH1.304e-1735.3350S ribosomal protein L11P OS=Methanobacterium the... [more]
RL11_METHJ1.304e-1735.3350S ribosomal protein L11P OS=Methanospirillum hun... [more]
RL11_METMJ1.703e-1735.5350S ribosomal protein L11P OS=Methanoculleus maris... [more]
RL11_UNCMA6.471e-1735.5750S ribosomal protein L11P OS=Uncultured methanoge... [more]
RL11_METM76.471e-1734.3950S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM66.471e-1734.3950S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METS58.451e-1738.9650S ribosomal protein L11P OS=Metallosphaera sedul... [more]
RL11_METMP1.104e-1635.2250S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_KORCO1.104e-1633.3350S ribosomal protein L11P OS=Korarchaeum cryptofi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271182 ID=DY271182; Name=DY271182; organism=Citrus clementina; type=EST; length=1027bp
GTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCCAAGTGGT
GGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCC
TCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCAAAGAAAATCGGAGAG
GACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGT
CAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCG
CCGCCGCCCTGGTGATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAG
AAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCAT
CGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTG
GCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTC
GATGGCAAGGACCCTAGGGACCTGCAGCAGGAGATCACTGATGGTGATGT
CGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGA
TTTTAATTTTTGTTTTTATCTCTATATATCAGTGCCTTTTTTTTTAATTA
TCAGTTTTGGATCTTTACAAGGAATTTAATGATGTCTCCCATTATTCCGA
GCTTTAAACGAGTGCTTTTTTAATTGGAATTTTAGGAAATGTAAGGTTTA
ATTTAGTGGACTTTAGGTTGAATGAAAAAAAAAAAAAAAAAAAAAACCCC
CTCTTTCTTGTAAAAAGTTGGGCATTAAAAAAAAAGCCTTGCCTTACCAT
TTTGTTCGCACGAACCGGGCCCCTTCCCGCCAAAATAAAAACTTTTATTT
CGCGCCCGGCGGAACCCCCCCCAACAGGGGACCTCCAAAACTCGGACCCA
GCTGGTTTCAGGCGCACCTACGGCCCCCGGCCCCAAACCCCCCGAAGCTT
CAACCTTACCACAACCATAAAACAACCCCCCTGTCCACACACCACCCCCC
CTCCCCCCTCACTGCGCATAAACACTT
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