DY271182

Overview
NameDY271182
Unique NameDY271182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METPE (50S ribosomal protein L11P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.441e-16
Identity = 52/156 (33.33%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIPLD 516
            V V V GG   A   + P +GPLG++ K + +DI K+TA ++ G++V VK+ V +++   ++V +P   ALV+K +   +   +    I   G++ ++  + IA++     ++ +L   VKE++GTCVSVG TVDGK P+++   I+ G  +  L+
Sbjct:    5 VEVLVPGGRATAGPPIGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVKIEVDDKKNVTISVGIPPTTALVMKEVGIEKGSAEPNSIIV--GDLPIEAAVRIARMKLDDMLSYELKTAVKEVIGTCVSVGVTVDGKKPKEILAAISAGQYDSVLE 157          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METM5 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.883e-16
Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   43 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  +  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ I  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NDMTKDYDGMSVPVKVIVDTDKRTFEVEVGIPPASALVKKELGIATGAQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAIDAGQFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_META3 (50S ribosomal protein L11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.194e-16
Identity = 55/158 (34.81%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   40 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            ++VVDV V  TGG+  A   L P +GPLG++   + ++I ++T KD+ G+ V VK+ V   +R  ++ V +P  +AL IK     ++   + K I   GN++++  ++IAK+ +   ++  L    KE++GTCVS G  V+G  PRD Q+ I  G+ +
Sbjct:    3 TEVVDVLV--TGGKATAGPPLGPAVGPLGINIMNVVKEINEKT-KDYAGMSVPVKVIVNTDDRSFEIEVGIPPTSAL-IKTELGLDKGSTEPKAIVA-GNLSMEQAVKIAKMKKDSMLSFTLKNATKEVIGTCVSTGINVEGMSPRDAQKAIDAGEFD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METLZ (50S ribosomal protein L11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.154e-16
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGD 498
            V V V GG   A   L P +GPLG++ K + +DI K+TA ++ G+ V V + V +++     V  P   ALV+K  +        T N +  GN+ L+ VI IAK+     ++ DL    KE++GTCVSVG TV+GK  +     +  G+
Sbjct:    5 VEVLVPGGRATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMSVPVTVMVDDKKNVTLTVGIPPTTALVMK--EAGVEKGSGTPNTQAVGNLPLEAVIRIAKMKMESMLSYDLKTAAKEVMGTCVSVGVTVEGKTAKQAIAAVNAGE 151          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METBF (50S ribosomal protein L11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.220e-15
Identity = 48/145 (33.10%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+L++K L   +        +   GNI++  V +IA++ +   ++ DL  T+KE++GTCV +G TV+G + RD Q+ +  G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLIMKELGIQKGSGNAGSEVV--GNISISQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVTVEGVEARDSQKALDQG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIM (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.081e-15
Identity = 53/154 (34.42%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K   + EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGVSEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_NITMS (50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.081e-15
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            VTGG   A   L P +GPLG++  ++   I  +T KD++G++V V + V +   K  +   +PSAAAL++K  +   +        +  G++T+D V+++A      S A  L    K I+GTC+++G  V+GK P+++  EI +G
Sbjct:   10 VTGGGASAGPPLGPALGPLGVNIMEVINAINDKT-KDFEGMKVPVTVIVDSDTKKYEIEIGIPSAAALIMK--EAGIQKGSGASGTEWAGDVTMDAVVKVANTKLENSYASSLKSVAKTIVGTCLALGVKVEGKTPKEITAEINEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIY (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.550e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIL (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.550e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIK (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.550e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
The following BLAST results are available for this feature:
BLAST of DY271182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METPE1.441e-1633.3350S ribosomal protein L11P OS=Methanosphaerula pal... [more]
RL11_METM51.883e-1634.3950S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_META34.194e-1634.8150S ribosomal protein L11P OS=Methanococcus aeolic... [more]
RL11_METLZ7.154e-1636.0050S ribosomal protein L11P OS=Methanocorpusculum l... [more]
RL11_METBF1.220e-1533.1050S ribosomal protein L11P OS=Methanosarcina barke... [more]
RL11_SULIM2.081e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_NITMS2.081e-1532.8850S ribosomal protein L11P OS=Nitrosopumilus marit... [more]
RL11_SULIY3.550e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIL3.550e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIK3.550e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271182 ID=DY271182; Name=DY271182; organism=Citrus clementina; type=EST; length=1027bp
GTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCCAAGTGGT
GGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCC
TCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCAAAGAAAATCGGAGAG
GACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGT
CAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCG
CCGCCGCCCTGGTGATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAG
AAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCAT
CGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTG
GCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTC
GATGGCAAGGACCCTAGGGACCTGCAGCAGGAGATCACTGATGGTGATGT
CGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGA
TTTTAATTTTTGTTTTTATCTCTATATATCAGTGCCTTTTTTTTTAATTA
TCAGTTTTGGATCTTTACAAGGAATTTAATGATGTCTCCCATTATTCCGA
GCTTTAAACGAGTGCTTTTTTAATTGGAATTTTAGGAAATGTAAGGTTTA
ATTTAGTGGACTTTAGGTTGAATGAAAAAAAAAAAAAAAAAAAAAACCCC
CTCTTTCTTGTAAAAAGTTGGGCATTAAAAAAAAAGCCTTGCCTTACCAT
TTTGTTCGCACGAACCGGGCCCCTTCCCGCCAAAATAAAAACTTTTATTT
CGCGCCCGGCGGAACCCCCCCCAACAGGGGACCTCCAAAACTCGGACCCA
GCTGGTTTCAGGCGCACCTACGGCCCCCGGCCCCAAACCCCCCGAAGCTT
CAACCTTACCACAACCATAAAACAACCCCCCTGTCCACACACCACCCCCC
CTCCCCCCTCACTGCGCATAAACACTT
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