DY271182

Overview
NameDY271182
Unique NameDY271182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIA (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.550e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METMA (50S ribosomal protein L11P OS=Methanosarcina mazei GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.637e-15
Identity = 47/145 (32.41%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V +IA++ +   ++ DL  T+KE++GTCV +G  V+G   +D Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTIPQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULSO (50S ribosomal protein L11P OS=Sulfolobus solfataricus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.910e-15
Identity = 52/154 (33.77%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   +K +LGT  S+G TVD +DP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSSTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAALKSMLGTAKSIGLTVDNRDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULAC (50S ribosomal protein L11P OS=Sulfolobus acidocaldarius GN=rpl11p PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 7.910e-15
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG       L P +  LGL+ +++ + I   TA+ +KG+ V V + + +   K  +   VP+  +L++KA+  +EP  D    K     GN+ L+ + +IA   +P+  AK L+  +K +LGT  S+G TV+GKDP+D+ +EI  G
Sbjct:    6 IKIMVEGGSAKPGPPLGPTLSQLGLNVQEVVKKINDVTAQ-FKGMSVPVTIEIDSSTKKYDIKVGVPTTTSLLLKAINAQEPSGDPAHKKI----GNLDLEQIADIAIKKKPQLSAKTLTAAIKSLLGTARSIGITVEGKDPKDVIKEIDQG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULIN (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.033e-14
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+I  + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIVIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METST (50S ribosomal protein L11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 48/158 (30.38%), Postives = 88/158 (55.70%), Query Frame = 1
Query:   40 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLT--VQNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            SQ +++ V   GG+      L P IGPLG++  ++ E+I K+TA D+ G++V VK+T  +  +  ++++  P   ALV+  L       +    +    + +++   ++A++     +A D     KE++GTCVS+G  V GKD R+ Q++I +GD +
Sbjct:    3 SQTIEILVE--GGKATPGPPLGPAIGPLGINMMQVVEEINKKTA-DFGGMKVPVKITADMDTKDFEISIGTPPTTALVLDELGIESGSHEPGTEVA--ADFSVEQAFKVARMKFDDLLANDYKHATKEVIGTCVSMGINVQGKDGRETQKDIDNGDYD 155          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METB6 (50S ribosomal protein L11P OS=Methanoregula boonei (strain 6A8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR-QAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V V V GG+  A   L P +GPLG++ K + ++I  +TA  + G++V VK+ V ++ Q  V V +P   AL+ K     +   +   N K  GN+  +  + IAK+     ++ +L    KE++GTCVS+G  VDGK P+++  +I  G
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDEINAKTAS-FNGMQVPVKVEVNDKKQFTVTVGIPPTTALIKKEANIEKGSAEP--NAKVAGNLPFEAAVRIAKMKLEGMLSYELKTATKEVVGTCVSMGVNVDGKRPKEVLADIAAG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METS3 (50S ribosomal protein L11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.301e-14
Identity = 43/150 (28.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V + + GG       L P +GP G++  ++ E+I  ++A D+ G++V VK+++     +  +    P   +L+++ L   +   +   +I    ++ +D  ++IA++     +A D    VKE++GTCVS+G +VDGKDPR+ Q+++  G
Sbjct:    6 VEILIEGGSATPGPPLGPALGPFGINMMQVVEEINNKSA-DFAGMKVPVKVSIDRDTKEFEIEIGTPPTTSLIMEELGIEKASHEPGADIV--ADLPIDKALKIARMKFDSLLANDYKAGVKEVMGTCVSMGLSVDGKDPREAQKDVDAG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METBU (50S ribosomal protein L11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.301e-14
Identity = 44/145 (30.34%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + GG+      L P +GPLG++ K + E I ++T KD+ G++V VK+ V + +  ++ V  P  +AL++K L   +   +    +   GN+ +  V +IA++ +   ++  L   +KE++GTCV +G T++  DPR+ Q+ + +G
Sbjct:    9 IPGGKANPGPPLGPALGPLGVNIKDVIEKINEKT-KDYNGMQVPVKVIVNDDKSVEIEVGTPPTSALILKELNIEKGSGESGTVVV--GNLEIAQVAKIARMKKDDILSYSLKAAIKEVMGTCVPMGVTIENLDPRECQKAVDEG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METTP (50S ribosomal protein L11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.006e-14
Identity = 47/149 (31.54%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR---QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            V+GG+  A   L P +GPLG++   +   I  E  KD  G++V VK+ V++R   + +V   P++A L+ +A  E     KK       G+I++D VI++A++ R   ++ +L   V EI+GTC ++G  +DG   +++Q+ +  G  +
Sbjct:    9 VSGGKATAGPPLGPALGPLGVNVAAVVAKI-NELTKDLNGMQVPVKIIVKSRTEFEIEVGTPPTSALLLKEAGVEKGSGDKKN----FVGDISMDQVIKVAEIKRKNLLSSNLKSAVSEIVGTCGTLGIKIDGLTSKEVQKALASGSYD 152          
The following BLAST results are available for this feature:
BLAST of DY271182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_SULIA3.550e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_METMA4.637e-1532.4150S ribosomal protein L11P OS=Methanosarcina mazei... [more]
RL11_SULSO7.910e-1533.7750S ribosomal protein L11P OS=Sulfolobus solfatari... [more]
RL11_SULAC7.910e-1532.8950S ribosomal protein L11P OS=Sulfolobus acidocald... [more]
RL11_SULIN1.033e-1433.7750S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_METST1.349e-1430.3850S ribosomal protein L11P OS=Methanosphaera stadt... [more]
RL11_METB61.349e-1434.2350S ribosomal protein L11P OS=Methanoregula boonei... [more]
RL11_METS32.301e-1428.6750S ribosomal protein L11P OS=Methanobrevibacter s... [more]
RL11_METBU2.301e-1430.3450S ribosomal protein L11P OS=Methanococcoides bur... [more]
RL11_METTP3.006e-1431.5450S ribosomal protein L11P OS=Methanosaeta thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271182 ID=DY271182; Name=DY271182; organism=Citrus clementina; type=EST; length=1027bp
GTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCCAAGTGGT
GGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCC
TCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCAAAGAAAATCGGAGAG
GACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGT
CAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCG
CCGCCGCCCTGGTGATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAG
AAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCAT
CGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTG
GCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTC
GATGGCAAGGACCCTAGGGACCTGCAGCAGGAGATCACTGATGGTGATGT
CGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGA
TTTTAATTTTTGTTTTTATCTCTATATATCAGTGCCTTTTTTTTTAATTA
TCAGTTTTGGATCTTTACAAGGAATTTAATGATGTCTCCCATTATTCCGA
GCTTTAAACGAGTGCTTTTTTAATTGGAATTTTAGGAAATGTAAGGTTTA
ATTTAGTGGACTTTAGGTTGAATGAAAAAAAAAAAAAAAAAAAAAACCCC
CTCTTTCTTGTAAAAAGTTGGGCATTAAAAAAAAAGCCTTGCCTTACCAT
TTTGTTCGCACGAACCGGGCCCCTTCCCGCCAAAATAAAAACTTTTATTT
CGCGCCCGGCGGAACCCCCCCCAACAGGGGACCTCCAAAACTCGGACCCA
GCTGGTTTCAGGCGCACCTACGGCCCCCGGCCCCAAACCCCCCGAAGCTT
CAACCTTACCACAACCATAAAACAACCCCCCTGTCCACACACCACCCCCC
CTCCCCCCTCACTGCGCATAAACACTT
back to top