DY271182

Overview
NameDY271182
Unique NameDY271182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_METAC (50S ribosomal protein L11P OS=Methanosarcina acetivorans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.127e-14
Identity = 44/145 (30.34%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   67 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V ++A++ +   ++ DL   +KE++G+CV +G  V+G   +D Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTISQVAKVARMKKEDVLSYDLKAAMKEVMGSCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_DESK1 (50S ribosomal protein L11P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.127e-14
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + V V GG+      L P + P  ++  ++ + I  +  KD++GL V V++T+    ++ +V V +P+  AL++K    K+P  D    K     GNI+ + V+++A + R    AK L   VK +LGT  S+G TVDGKDP+++Q+ + +G
Sbjct:    6 IRVMVEGGKATPGPPLGPTLSPYKVNIPQVVKAI-NDATKDFEGLSVPVEITIDIDTKEFEVRVGIPTTTALLMKEAGAKQPTGDPAHQKI----GNISFEQVVKVAILKRDSLTAKTLRAAVKTVLGTARSIGITVDGKDPKEVQKLVDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: YD417_YEAST (Putative uncharacterized protein YDR417C OS=Saccharomyces cerevisiae GN=YDR417C PE=5 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.137e-13
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = -3
Query:    9 FWTVSLTVTRKPFQSLAVSLAMSSPIFFGERPRGPIFGARELAAPTSPPVTRTYTSTTWLGSNFGGMIAL 218
            FW  + TVT  P  SL V+LA+SSP FFG++P GPIFGA+   APTSPP    Y   T  GSNFGG++ +
Sbjct:   39 FWIFNWTVTLIPLNSL-VALAISSPTFFGDKPNGPIFGAKAAEAPTSPPTALKYKYLTSFGSNFGGILTI 107          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_SULTO (50S ribosomal protein L11P OS=Sulfolobus tokodaii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.323e-13
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALK--EPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + V GG V     LAP +  LGL+   +GE + K  +    +KG+ V V L V     K  +   +P+  +L++K     EP  D    K     G+I  +D+I++A + +P+  AK L   VK ILGT  S+G TVD K P++L + + +G
Sbjct:    6 IKIVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINDATSQFKGMSVPVTLEVDTDTKKYEIKVGIPTTTSLLLKFANASEPSGDPAHKKV----GDIKFEDIIQVAIMKKPQITAKTLKAAVKSILGTAHSIGLTVDKKSPKELVKAVDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_NANEQ (50S ribosomal protein L11P OS=Nanoarchaeum equitans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.649e-12
Identity = 44/152 (28.95%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   49 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 495
            + + + VTGG+      + P + P  ++P K+  +I K T K+++GL V V++ +  + ++ K+ V +P  +AL++KA       ++     +  GN+++ DV+EIAK          L   VK +LGT  + G  V+ KDP+++ +E+ +G
Sbjct:    4 IAIRLLVTGGKATPGPPIGPALSPFKINPGKVVAEINKLT-KEYEGLPVPVEIIINPETKEYKIIVGLPPTSALLMKAAGVTRGPQRTVH--EWVGNVSMKDVVEIAKKKIDSMPTSSLKAAVKSVLGTARATGIKVENKDPKEVTKEVDEG 152          
BLAST of DY271182 vs. ExPASy Swiss-Prot
Match: RL11_HALMA (50S ribosomal protein L11P OS=Haloarcula marismortui GN=rpl11p PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 43/152 (28.29%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   55 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK-DWKGLRVTVKLTVQNR-QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 504
            + V V GGE      L P++GP  +  + + ++I  +TA  D   + VTVK       + +V V P+A  +  +A  E      +   +    ++++D V +IA+   P  ++ DL+   KE++GTC S+G T++G++PR+ ++ I  G+ +
Sbjct:    5 IEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFV---ADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153          
The following BLAST results are available for this feature:
BLAST of DY271182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METAC5.127e-1430.3450S ribosomal protein L11P OS=Methanosarcina aceti... [more]
RL11_DESK15.127e-1432.8950S ribosomal protein L11P OS=Desulfurococcus kamc... [more]
YD417_YEAST1.137e-1354.29Putative uncharacterized protein YDR417C OS=Saccha... [more]
RL11_SULTO3.323e-1333.1250S ribosomal protein L11P OS=Sulfolobus tokodaii ... [more]
RL11_NANEQ1.649e-1228.9550S ribosomal protein L11P OS=Nanoarchaeum equitan... [more]
RL11_HALMA5.305e-1128.2950S ribosomal protein L11P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271182 ID=DY271182; Name=DY271182; organism=Citrus clementina; type=EST; length=1027bp
GTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCCAAGTGGT
GGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCC
TCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCAAAGAAAATCGGAGAG
GACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGT
CAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCG
CCGCCGCCCTGGTGATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAG
AAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCAT
CGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTG
GCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTC
GATGGCAAGGACCCTAGGGACCTGCAGCAGGAGATCACTGATGGTGATGT
CGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGA
TTTTAATTTTTGTTTTTATCTCTATATATCAGTGCCTTTTTTTTTAATTA
TCAGTTTTGGATCTTTACAAGGAATTTAATGATGTCTCCCATTATTCCGA
GCTTTAAACGAGTGCTTTTTTAATTGGAATTTTAGGAAATGTAAGGTTTA
ATTTAGTGGACTTTAGGTTGAATGAAAAAAAAAAAAAAAAAAAAAACCCC
CTCTTTCTTGTAAAAAGTTGGGCATTAAAAAAAAAGCCTTGCCTTACCAT
TTTGTTCGCACGAACCGGGCCCCTTCCCGCCAAAATAAAAACTTTTATTT
CGCGCCCGGCGGAACCCCCCCCAACAGGGGACCTCCAAAACTCGGACCCA
GCTGGTTTCAGGCGCACCTACGGCCCCCGGCCCCAAACCCCCCGAAGCTT
CAACCTTACCACAACCATAAAACAACCCCCCTGTCCACACACCACCCCCC
CTCCCCCCTCACTGCGCATAAACACTT
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