DY271186

Overview
NameDY271186
Unique NameDY271186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length998
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: GARL_ESCF3 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=garL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.880e-24
Identity = 59/177 (33.33%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  312 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            K  L +++   G +    +P   E+ GLAG+D++V+D EH P  ++  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A  AV+  R+PP G+RG      RA+ +G    Y     + + I+ Q+ESQ GV   + IA  +GVDG+ +GP DL A++G+
Sbjct:   11 KAALAAHQVQIGCWSALANPISTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSISAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETKEQAINAVAATRYPPEGIRG-VSVSHRANMFGTVPDYFVQSNKNITILVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALGH 186          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: BPHF_RHOSR (4-hydroxy-2-oxovalerate aldolase OS=Rhodococcus sp. (strain RHA1) GN=bphF PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.880e-24
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            S K  L    T  G +L       AE+   AG+D++++D EH P  +   LA L  + A     A +R+P +  T  K+ LDLG Q ++ PM+D+ + A   V  CR+PP G+RG      RAS +G    YL   +E++ ++ Q E+   +   E IA VDG+DGV +G  DL AS+G+
Sbjct:    7 SFKKALAEGRTQIGFWLALGDAYSAEVCAGAGFDWLLIDGEHAPQDLRSVLAQLQVIGAYRDCHAAVRVPSADTTVIKQYLDLGAQSLLVPMVDTADEAAAVVRACRYPPGGIRGVGG--ARASRWGRYPRYLHEADEQVCVVVQAETALALSNLEAIAEVDGIDGVFIGTADLAASLGF 184          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALSV (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella schwarzengrund (strain CVM19633) GN=hpcH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.174e-23
Identity = 57/179 (31.84%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L+      GL+L   +   AE+   +G+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKVGRPQIGLWLGLANSYSAELLAGSGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
The following BLAST results are available for this feature:
BLAST of DY271186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GARL_ESCF36.880e-2433.335-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
BPHF_RHOSR6.880e-2436.114-hydroxy-2-oxovalerate aldolase OS=Rhodococcus sp... [more]
HPCH_SALSV1.174e-2331.844-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271186 ID=DY271186; Name=DY271186; organism=Citrus clementina; type=EST; length=998bp
TCACTATCAGATAGCCCACCGCCTTCACACTTGACGAAGACGAACTGAGC
GGAACTGAAACTGAGACAATTACAAAAGCAACCATGACCACGCTCACTTG
CTCGGGCTCCGGCACTGCCGCCACTGTCGCCAAGCTTGCACAAAATAAAA
TCAGTTCATTTCCAAAAGCACCCTTGTTCACCCTCAACGGCAACAAATCG
AAAATCGTTTTCCCAAAACTGAAATTGACCCCCTCAGTCTCACGCTCACC
CTCGGATCTGTCGCCAGGCGATCCCCTTTCCCCATCTCCATCACCCTCGC
CCGAATCACTCAAGTATCGCCTCCAAAGCAACGAAACCCTGTACGGACTC
TTCCTCCTCTCTTTCTCCCCAACTCTTGCCGAAATTTCGGGCCTGGCCGG
TTACGATTTCGTCGTCGTAGACATGGAGCACGGCCCTGGCGGCATTTCCG
ATGCTCTCGCTTGCCTTCACGCTCTTGCCGCCACGGGGACGCCGGCCATT
CTGCGGCTCCCTGAAAGTTGCCCAACTTGGGCTAAAAAGGCCCTCGATCT
GGGCCCACAAGGGGTCATGTTCCCTATGATTGACTCCCCAGAAGCCGCCA
AGGAAGCGGTGTCGTATTGCCGGTTCCCGCCTTCTGGAGTGCGGGGATCC
GCTCACACGGTGGTGAGAGCGTCCGGTTACGGGATTGATGANGGATACTT
GAGTAATTACGAGGAGGAGTTGTTGATTATGTGCCAAGTGGAGAGCCAGG
AAGGCGTCCAGCGAGCCGAAGACATCGCGCCGGTTGATGGGGTTGACGGC
GTGCAAATGGGACCGTTGGATTTGATTGCCAGTATGGGGTACTGGGGGAC
CCCGGGCCCAGGAAGGTGAAGGAAAAGATGAGGGTGGCCGAAAAAGGGGT
TTTGGGCGGTGGCAAGGCTAACTTGGGTGGGTTTGCCTAGCCCCTTGAGG
GACCCCCTTGAAAAGAAATCCCGGGGGAACCCCCAGGGGGGCCGGGGG
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