DY271186

Overview
NameDY271186
Unique NameDY271186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length998
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SHIFL (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella flexneri GN=hpcH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.765e-25
Identity = 60/179 (33.52%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            S K  L++     GL+L   S   AE+    G+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A++AV   R+PP+G+RG    + RAS +     YL    +++ ++ Q+E++E ++    I  V+GVDGV +GP DL A MGY
Sbjct:    4 SFKAALKAGRPQIGLWLGLSSSYSAELLAGPGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEARKAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGY 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALDC (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella dublin (strain CT_02021853) GN=hpcH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.386e-24
Identity = 58/179 (32.40%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A+  +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIASYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALHS (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella heidelberg (strain SL476) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.811e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPNYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALAR (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.811e-24
Identity = 58/179 (32.40%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A++AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELVAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLVPMVQNADEARDAVAATRYPPAGIRGVGSALARASRWNRIPDYLHEANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: GARL_SALG2 (5-keto-4-deoxy-D-glucarate aldolase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=garL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.811e-24
Identity = 59/177 (33.33%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  312 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            K  L + +   G +    SP   E+ GLAG+D++V+D EH P  ++  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A  AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ESQ GV   + IA  +GVDG+ +GP DL A++ +
Sbjct:   11 KAALAAQQVQIGCWSALASPITTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETQEEAARAVASTRYPPEGIRG-VSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALSH 186          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALTI (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella typhi GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALPC (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella paratyphi C (strain RKS4594) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDTLKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALPB (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALNS (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella newport (strain SL254) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
BLAST of DY271186 vs. ExPASy Swiss-Prot
Match: HPCH_SALG2 (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hpcH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  306 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDXGYLSNYEEELLIMCQVESQEGVQRAEDIAPVDGVDGVQMGPLDLIASMGY 842
            + K  L++     GL+L   +   AE+   AG+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A+ AV+  R+PP+G+RG    + RAS +     YL    + + ++ Q+E++E +     I  VDG+DGV +GP DL A MG+
Sbjct:    4 AFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEARNAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASILDVDGIDGVFIGPADLSADMGF 182          
The following BLAST results are available for this feature:
BLAST of DY271186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
HPCH_SHIFL4.765e-2533.524-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shi... [more]
HPCH_SALDC1.386e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALHS1.811e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALAR1.811e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
GARL_SALG21.811e-2433.335-keto-4-deoxy-D-glucarate aldolase OS=Salmonella ... [more]
HPCH_SALTI2.365e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALPC2.365e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALPB2.365e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALNS2.365e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]
HPCH_SALG22.365e-2432.404-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Sal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YC04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271186 ID=DY271186; Name=DY271186; organism=Citrus clementina; type=EST; length=998bp
TCACTATCAGATAGCCCACCGCCTTCACACTTGACGAAGACGAACTGAGC
GGAACTGAAACTGAGACAATTACAAAAGCAACCATGACCACGCTCACTTG
CTCGGGCTCCGGCACTGCCGCCACTGTCGCCAAGCTTGCACAAAATAAAA
TCAGTTCATTTCCAAAAGCACCCTTGTTCACCCTCAACGGCAACAAATCG
AAAATCGTTTTCCCAAAACTGAAATTGACCCCCTCAGTCTCACGCTCACC
CTCGGATCTGTCGCCAGGCGATCCCCTTTCCCCATCTCCATCACCCTCGC
CCGAATCACTCAAGTATCGCCTCCAAAGCAACGAAACCCTGTACGGACTC
TTCCTCCTCTCTTTCTCCCCAACTCTTGCCGAAATTTCGGGCCTGGCCGG
TTACGATTTCGTCGTCGTAGACATGGAGCACGGCCCTGGCGGCATTTCCG
ATGCTCTCGCTTGCCTTCACGCTCTTGCCGCCACGGGGACGCCGGCCATT
CTGCGGCTCCCTGAAAGTTGCCCAACTTGGGCTAAAAAGGCCCTCGATCT
GGGCCCACAAGGGGTCATGTTCCCTATGATTGACTCCCCAGAAGCCGCCA
AGGAAGCGGTGTCGTATTGCCGGTTCCCGCCTTCTGGAGTGCGGGGATCC
GCTCACACGGTGGTGAGAGCGTCCGGTTACGGGATTGATGANGGATACTT
GAGTAATTACGAGGAGGAGTTGTTGATTATGTGCCAAGTGGAGAGCCAGG
AAGGCGTCCAGCGAGCCGAAGACATCGCGCCGGTTGATGGGGTTGACGGC
GTGCAAATGGGACCGTTGGATTTGATTGCCAGTATGGGGTACTGGGGGAC
CCCGGGCCCAGGAAGGTGAAGGAAAAGATGAGGGTGGCCGAAAAAGGGGT
TTTGGGCGGTGGCAAGGCTAACTTGGGTGGGTTTGCCTAGCCCCTTGAGG
GACCCCCTTGAAAAGAAATCCCGGGGGAACCCCCAGGGGGGCCGGGGG
back to top