DY271187

Overview
NameDY271187
Unique NameDY271187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3853 contig Ccv1_Contig3853:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 505
            LRACL C LVK++DQF   GCENC  F +M  + + V D T+ NF+GII++  PT SW A+W R+ RF  G Y ++VS  LP+
Sbjct:   13 LRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GI ++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.116e-17
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  230 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559
            A +P      LRACL C LVK+ + F++ GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS  LP ++ +  +   V+Y P +R
Sbjct:    3 ASVPADL-RNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            LRAC+ C LV+ + +F   GC NC     +  +++ + +CT+  F G+I++ DP+ SW ARW R+  +V G Y + V+ +LP+D+    ED  V+Y+P
Sbjct:   15 LRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEBR (Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  230 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559
            A IP+     LRACL C L+K+ D F+  GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS +LP ++ +  +   V+Y   +R
Sbjct:    3 ASIPSDL-RNLRACLLCSLIKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  293 TYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 550
            T  +F+  GC NC  F  +    +++  CT+  F G+I++ +PT+SW A++ R+  +VPG Y + VS  LP+D+++  EDE R+QY+P
Sbjct:    2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_ASHGO (Transcription elongation factor SPT4 OS=Ashbya gossypii GN=SPT4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520
            RAC+ C +V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+W+ + ++VPG Y + V   LP ++ +L
Sbjct:    5 RACMLCGIVQTTNEFTRDGCPNCQGI-FEEASVSAIECTSPSFEGLVGMCKPTKSWVAKWISVEQYVPGMYAIKVDGRLPVEVVDL 89          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_KLULA (Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520
            RAC+ C LV++  +F  +GC NC     +E     V+CT+P+F G++ +  P+RSW ARW+ I  ++PG Y + +   LP ++  L
Sbjct:    5 RACMLCGLVQSTAEFNRNGCPNCQSI-FEEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTEL 89          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_CRYNE (Transcription elongation factor SPT4 OS=Cryptococcus neoformans GN=SPT4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  239 PTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            P S   ELRACL C ++++ + F   GC NC    +M    ERV +CT+  ++G+I++++P+ SW ARW RI + + G Y + V+   P+D+ +  E     Y P
Sbjct:    3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIEPSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRP 107          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_CANGA (Transcription elongation factor SPT4 OS=Candida glabrata GN=SPT4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520
            RAC+ C +V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+WL +   +PG Y + V   LP ++  L
Sbjct:    5 RACMLCGIVQTTNEFGRVGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDANIPGMYAVKVDGRLPPEVVEL 89          
The following BLAST results are available for this feature:
BLAST of DY271187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT4H_DROME3.773e-1850.60Transcription elongation factor SPT4 OS=Drosophila... [more]
SPT42_MOUSE6.436e-1841.35Transcription elongation factor SPT4 2 OS=Mus musc... [more]
SPT4H_CAEEL7.116e-1737.84Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_ASPFU7.868e-1637.76Transcription elongation factor spt4 OS=Aspergillu... [more]
SPT4H_CAEBR7.868e-1637.84Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_GIBZE3.306e-1438.64Transcription elongation factor SPT4 OS=Gibberella... [more]
SPT4_ASHGO3.306e-1436.05Transcription elongation factor SPT4 OS=Ashbya gos... [more]
SPT4_KLULA9.618e-1437.21Transcription elongation factor SPT4 OS=Kluyveromy... [more]
SPT4_CRYNE2.143e-1336.19Transcription elongation factor SPT4 OS=Cryptococc... [more]
SPT4_CANGA1.063e-1236.05Transcription elongation factor SPT4 OS=Candida gl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271187 ID=DY271187; Name=DY271187; organism=Citrus clementina; type=EST; length=769bp
CAGAATACTAAAACTACAGTTGCAATGAAATTACAAGAATAACACCGATT
CCGGATTACCAGCAGCTTCCGAGCATTCGTCGTCGTGTCTTCTCTGGAAC
TCTCTTACTGGCCCTTAAAAGATCAAGGTCTCTGTCATCAAGAGACGAAA
CGACTTACAGATATTGTCGGGTGCCGCGAGAGAAGAAGCATCTAGTACCT
GGCTCGGGAGAACAATGGGAAGCGCACCGGCACAAATTCCAACAAGCTTC
GGGCATGAGCTGAGAGCTTGCCTCCGTTGTCGGCTTGTCAAAACCTATGA
TCAGTTTAGAGAATCGGGATGCGAGAACTGTCCCTTCTTCAAGATGGATG
AAGACCACGAGCGTGTTGTTGATTGTACTACCCCTAATTTTAATGGCATT
ATATCAGTCATGGATCCAACTAGAAGCTGGGCTGCTCGCTGGTTGCGAAT
TGGAAGATTTGTCCCTGGTTGTTATACTCTTGCTGTCTCAGAAGCCCTAC
CTGAGGACTTGCAGAACTTATGCGAAGACGAGCGCGTGCAATATGTGCCG
CCAAAACGTTAATGACAGTTTGAGCAGTGCATTGTCTGTAAAGATTATAT
CTGTTTCGGGTTACTTCGGAGATGACATGTTTAACGATTATATGCAACTG
TAGCTGCTAATGTTGACTTGAATTTCTTGTGCCCAATGCTTGTGTAATAA
TCCTATTTATGTTTGTAACTTGTATGCTGCGTTTTGATTTTTTAATGGAA
TTCTAGAAACTTTTGAGTT
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