DY271187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18 Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 2 Query: 260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 505 LRACL C LVK++DQF GCENC F +M + + V D T+ NF+GII++ PT SW A+W R+ RF G Y ++VS LP+ Sbjct: 13 LRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18 Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI ++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.116e-17 Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 2 Query: 230 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559 A +P LRACL C LVK+ + F++ GCENC + D E+V DCT+ N++G+I+ M SW +W ++ R V G Y ++VS LP ++ + + V+Y P +R Sbjct: 3 ASVPADL-RNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16 Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 2 Query: 260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550 LRAC+ C LV+ + +F GC NC + +++ + +CT+ F G+I++ DP+ SW ARW R+ +V G Y + V+ +LP+D+ ED V+Y+P Sbjct: 15 LRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEBR (Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16 Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 2 Query: 230 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559 A IP+ LRACL C L+K+ D F+ GCENC + D E+V DCT+ N++G+I+ M SW +W ++ R V G Y ++VS +LP ++ + + V+Y +R Sbjct: 3 ASIPSDL-RNLRACLLCSLIKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14 Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 293 TYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 550 T +F+ GC NC F + +++ CT+ F G+I++ +PT+SW A++ R+ +VPG Y + VS LP+D+++ EDE R+QY+P Sbjct: 2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_ASHGO (Transcription elongation factor SPT4 OS=Ashbya gossypii GN=SPT4 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14 Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520 RAC+ C +V+T ++F GC NC +E ++CT+P+F G++ + PT+SW A+W+ + ++VPG Y + V LP ++ +L Sbjct: 5 RACMLCGIVQTTNEFTRDGCPNCQGI-FEEASVSAIECTSPSFEGLVGMCKPTKSWVAKWISVEQYVPGMYAIKVDGRLPVEVVDL 89
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_KLULA (Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14 Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 2 Query: 263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520 RAC+ C LV++ +F +GC NC +E V+CT+P+F G++ + P+RSW ARW+ I ++PG Y + + LP ++ L Sbjct: 5 RACMLCGLVQSTAEFNRNGCPNCQSI-FEEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTEL 89
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_CRYNE (Transcription elongation factor SPT4 OS=Cryptococcus neoformans GN=SPT4 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 239 PTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550 P S ELRACL C ++++ + F GC NC +M ERV +CT+ ++G+I++++P+ SW ARW RI + + G Y + V+ P+D+ + E Y P Sbjct: 3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIEPSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRP 107
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_CANGA (Transcription elongation factor SPT4 OS=Candida glabrata GN=SPT4 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12 Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 2 Query: 263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520 RAC+ C +V+T ++F GC NC +E ++CT+P+F G++ + PT+SW A+WL + +PG Y + V LP ++ L Sbjct: 5 RACMLCGIVQTTNEFGRVGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDANIPGMYAVKVDGRLPPEVVEL 89 The following BLAST results are available for this feature:
BLAST of DY271187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271187 ID=DY271187; Name=DY271187; organism=Citrus clementina; type=EST; length=769bpback to top |