DY271187

Overview
NameDY271187
Unique NameDY271187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_YEAST (Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae GN=SPT4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 520
            RAC+ C +V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+WL +   + G Y + V   LP ++  L
Sbjct:    5 RACMLCGIVQTTNEFNRDGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVDGRLPAEVVEL 89          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_CANAL (Transcription elongation factor SPT4 OS=Candida albicans GN=SPT4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCP--FFKMDEDHERVVDCTTPNFNGIISVMDPTR-SWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            RAC+ C +++    F + GC NC         D+++V DCT+P+F G++++ +  + SW ARWLRI  F  G Y + V+  LP  +    E++ V Y P
Sbjct:    7 RACMLCGIIQPMKSFIDYGCPNCESLLHYQYNDNKQVQDCTSPSFEGLVALGEDNKGSWVARWLRIDSFTAGLYAVKVNGKLPPSIIAELEEQNVIYRP 105          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_DEBHA (Transcription elongation factor SPT4 OS=Debaryomyces hansenii GN=SPT4 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHE--RVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            RAC+ C +++ + +F + GC NC      +D+E  +V DCT+P+F G++++ D T+S     LRI  FV G Y + ++  LP  +     D+ + Y P
Sbjct:    7 RACMLCGIIQPFRKFVDFGCPNCESVLHFQDNEDNQVQDCTSPSFEGLVALGDETKSPGGERLRIDSFVAGLYAVKINGKLPPHIIGDLADQNISYRP 104          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_SCHPO (Transcription elongation factor spt4 OS=Schizosaccharomyces pombe GN=spt4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 36/96 (37.50%), Postives = 46/96 (47.92%), Query Frame = 2
Query:  263 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            RACL C +V  +  F   GC N       +  + V   T+P F GI+++M PT SW ARW RI  F PG Y   V   L ED+        + Y P
Sbjct:   10 RACLICGIVLPHSVFANKGCPN-------DGVDDVETFTSPVFEGIMAMMSPTESWVARWQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRP 98          
The following BLAST results are available for this feature:
BLAST of DY271187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT4_YEAST1.389e-1234.88Transcription elongation factor SPT4 OS=Saccharomy... [more]
SPT4_CANAL3.094e-1235.35Transcription elongation factor SPT4 OS=Candida al... [more]
SPT4_DEBHA2.619e-1133.67Transcription elongation factor SPT4 OS=Debaryomyc... [more]
SPT4_SCHPO9.953e-1137.50Transcription elongation factor spt4 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271187 ID=DY271187; Name=DY271187; organism=Citrus clementina; type=EST; length=769bp
CAGAATACTAAAACTACAGTTGCAATGAAATTACAAGAATAACACCGATT
CCGGATTACCAGCAGCTTCCGAGCATTCGTCGTCGTGTCTTCTCTGGAAC
TCTCTTACTGGCCCTTAAAAGATCAAGGTCTCTGTCATCAAGAGACGAAA
CGACTTACAGATATTGTCGGGTGCCGCGAGAGAAGAAGCATCTAGTACCT
GGCTCGGGAGAACAATGGGAAGCGCACCGGCACAAATTCCAACAAGCTTC
GGGCATGAGCTGAGAGCTTGCCTCCGTTGTCGGCTTGTCAAAACCTATGA
TCAGTTTAGAGAATCGGGATGCGAGAACTGTCCCTTCTTCAAGATGGATG
AAGACCACGAGCGTGTTGTTGATTGTACTACCCCTAATTTTAATGGCATT
ATATCAGTCATGGATCCAACTAGAAGCTGGGCTGCTCGCTGGTTGCGAAT
TGGAAGATTTGTCCCTGGTTGTTATACTCTTGCTGTCTCAGAAGCCCTAC
CTGAGGACTTGCAGAACTTATGCGAAGACGAGCGCGTGCAATATGTGCCG
CCAAAACGTTAATGACAGTTTGAGCAGTGCATTGTCTGTAAAGATTATAT
CTGTTTCGGGTTACTTCGGAGATGACATGTTTAACGATTATATGCAACTG
TAGCTGCTAATGTTGACTTGAATTTCTTGTGCCCAATGCTTGTGTAATAA
TCCTATTTATGTTTGTAACTTGTATGCTGCGTTTTGATTTTTTAATGGAA
TTCTAGAAACTTTTGAGTT
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