DY271194

Overview
NameDY271194
Unique NameDY271194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271194 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 2 
Query:  209 ETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQR----GIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 550
            +  A+     D K+ P A+ F  D+PGL              L ISG+R    G E ++++  + R ER  G F R+F LP+N  +D+I A  ++GVLTVTV K+        K IE+
Sbjct:   46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163
The following BLAST results are available for this feature:
BLAST of DY271194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HSP18_ORYSJ4.467e-1134.7518.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271194 ID=DY271194; Name=DY271194; organism=Citrus clementina; type=EST; length=911bp
CACTTGCGTATCCTGCATTCTGCAACACCTACTTTTCTATTAGTTCATAA
CCCGAAAAGAAAGCTAGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAAC
CGACGCAGCAGTGTGTTCGATCCATTCTCGCTCGACGTTTGGGATCCATT
CAGGGACTTCCCTTTGCCGTCTGGTTATTCGTCTGCGCTGTCCTCCCAGT
TCCCTCCAGAAACCTCCGCTGTCGTTAACGCCCGCGTGGACTGGAAGGAA
ACCCCGGAAGCCCACGTGTTCAAGGCCGATCTCCCGGGGCTGAGGAAAGA
GGAAGTGAAGGTCGAGGTCGAGGACGACAGGGTGCTTCAGATAAGCGGGC
AGAGGGGGATCGAGAGGGAGGACAAGAACGACACGTGGCATCGCTGGGAG
CGCAGCAGCGGCATGTTCTCGAGGAGGTTCAGGCTGCCTGAGAATGTGAA
GATGGATCAGATAAAGGCTTCCATGGAGAATGGTGTGCTCACTGTTACAG
TCCCTAAGGTGGAGGAGGCCAGGAAAGCTAATGCCAAGGCTATTGAAATT
TCTGGCTGATAAATTGATATATTTAATAAACGAAGATGATTTAAAATTTG
TGTTGAATCCCGAGTGTGTTTGCGTGGTTTATTACCTCGCTCCGTGTTGA
ATTTAAGTGACGCCTAACATTTTTGTGTGGCGTGTAACCAAGAGAAGGGT
AAGTTAGTAAACCCCGCGCCTCCCTTAGAAATAGGGTAAAAGGTGGTCCG
TCACCCTCTGAAAAGTAAAAAAACAAAAGCAACACCAAAAAATCGGAATT
AACCACAACGCAACCCCACGCTTAAAGATTCCAACAAAAAAAACAAAAAT
CAAACAAACGAAAACTACCAACACATTATTGGACCAAGATATAGGAAAAG
AAAAAAGAAAA
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