DY271197 | Citrus Genome Database

Overview


Name	DY271197
Unique Name	DY271197
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	900

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.110e-24
Identity = 48/136 (35.29%), Postives = 81/136 (59.56%), Query Frame = 1

Query:  199 ERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMKK-KYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKD 603
            +RY   + +G GT+G V++A   ++ + VAIKK++  K         LRE+K L+++ HP+I+ L +     + L+ VFE+ME  L  +++D     S A+++++    F+GLAY H +   HRD+KP NLL+  D
Sbjct:   10 DRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPADIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIGVD 145

HSP 2 Score: 37.3502 bits (85), Expect = 1.110e-24
Identity = 19/34 (55.88%), Postives = 22/34 (64.71%), Query Frame = 2

Query:  608 IKIADSGLAREINS-RPPFTEYVLTRWYRAPEVL 706
            +K+AD GLAR   S    FT  V  RWYRAPE+L
Sbjct:  148 LKLADFGLARIFGSPNRKFTHQVFARWYRAPELL 181

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.112e-24
Identity = 51/138 (36.96%), Postives = 88/138 (63.77%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMKKKYYS-WEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKC-FSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKD 603
            ME ++ ++++G+GT+G V++A +K +GEVVA+KK++    +       +RE+  L++++HPNIVKL +VI   + LY VFE++   L + M            ++++ FQ+ QGLA+ H     HRDLKP+NLL++ +
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAE 138

HSP 2 Score: 35.039 bits (79), Expect = 1.112e-24
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  605 TIKIADSGLAREINSRP-PFTEYVLTRWYRAPEVL 706
            +IK+AD GLAR        +T  V+T WYRAPE+L
Sbjct:  140 SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEIL 174

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.116e-24
Identity = 51/138 (36.96%), Postives = 88/138 (63.77%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMKKKYYS-WEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKC-FSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKD 603
            ME ++ ++++G+GT+G V++A +K +GEVVA+KK++    +       +RE+  L++++HPNIVKL +VI   + LY VFE++   L + M            ++++ FQ+ QGLA+ H     HRDLKP+NLL++ +
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGLPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAE 138

HSP 2 Score: 35.039 bits (79), Expect = 1.116e-24
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  605 TIKIADSGLAREINSRP-PFTEYVLTRWYRAPEVL 706
            +IK+AD GLAR        +T  V+T WYRAPE+L
Sbjct:  140 SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEIL 174

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.116e-24
Identity = 51/138 (36.96%), Postives = 88/138 (63.77%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMKKKYYS-WEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLM-KDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKD 603
            ME ++ ++++G+GT+G V++A +K +GEVVA+KK++    +       +RE+  L++++HPNIVKL +VI   + LY VFE++   L + M            ++++ FQ+ QGLA+ H     HRDLKP+NLL++ +
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASAVTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAE 138

HSP 2 Score: 35.039 bits (79), Expect = 1.116e-24
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  605 TIKIADSGLAREINSRP-PFTEYVLTRWYRAPEVL 706
            +IK+AD GLAR        +T  V+T WYRAPE+L
Sbjct:  140 SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEIL 174

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-24
Identity = 47/140 (33.57%), Postives = 87/140 (62.14%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMK-KKYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKCFSE-AEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDHN 609
            ME+Y+ ++++G+GT+G V++A  + + E +A+KK++ ++         +RE+  L++M H NIV+L++V+     LY VFEY++  L + M    +   +  +V+ + +Q+  G+AY H     HRDLKP+NLL+ +  N
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTN 140

HSP 2 Score: 37.3502 bits (85), Expect = 1.116e-24
Identity = 28/78 (35.90%), Postives = 35/78 (44.87%), Query Frame = 2

Query:  605 TIKIADSGLAREINSRP-PFTEYVLTRWYRAPEVLPPDIPAHLQS*FLGQRRLSWP-----------NLLLPAPLFPG 802
            ++K+AD GLAR        FT  V+T WYRAPE+L            LG R  S P            ++   PLFPG
Sbjct:  141 SLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEIL------------LGSRHYSTPVDVWSVGCLFAEMVNRRPLFPG 206

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-24
Identity = 50/143 (34.97%), Postives = 89/143 (62.24%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKKMK-KKYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKC--FSEAE--VRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDHN 609
            ME+Y+ ++++G+GT+G V++A  + + E +A+KK++ ++         +RE+  L++M H NIV+L++V+     LY VFEY++     L K  + C  FS+    V+ + +Q+ +G+AY H     HRDLKP+NLL+ +  N
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD---LDLKKHMDSCPEFSQDPRLVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN 140

HSP 2 Score: 37.3502 bits (85), Expect = 1.116e-24
Identity = 28/77 (36.36%), Postives = 34/77 (44.16%), Query Frame = 2

Query:  608 IKIADSGLAREINSRP-PFTEYVLTRWYRAPEVLPPDIPAHLQS*FLGQRRLSWP-----------NLLLPAPLFPG 802
            +K+AD GLAR        FT  V+T WYRAPE+L            LG R  S P            ++   PLFPG
Sbjct:  142 LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEIL------------LGSRHYSTPVDVWSVGCIFAEMVNQRPLFPG 206

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDKL2_MOUSE (Cyclin-dependent kinase-like 2 OS=Mus musculus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-24
Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKK-MKKKYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSK 600
            ME+Y+ +  VG+G++G V +  +K SG +VAIKK ++       + + +RE+K L+++ H N+V L EV ++    Y VFE+++ ++   +K          V+ + FQ+  G+ + H     HRD+KPEN+LVS+
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQ 136

HSP 2 Score: 42.743 bits (99), Expect = 1.435e-24
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 2

Query:  596 QKTTIKIADSGLAREINSRPP-FTEYVLTRWYRAPEVLPPDIPAHLQS*FLGQRRLSWP------NLLLPAPLFPG 802
            Q   +K+ D G AR + +    +T+YV TRWYRAPE+L  D+         G+    W        +L+  PLFPG
Sbjct:  136 QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVK-------YGKAVDIWAIGCLVIEMLMGQPLFPG 204

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDKL2_RABIT (Cyclin-dependent kinase-like 2 OS=Oryctolagus cuniculus GN=CDKL2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-24
Identity = 45/136 (33.09%), Postives = 82/136 (60.29%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKK-MKKKYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSK 600
            ME+Y+ +  VG+G++G V +  +K SG +VAIKK ++       + + +RE+K L+++ H N+V L EV ++    Y VFE+++ ++   ++       +  V+ + FQ+  G+ + H     HRD+KPEN+LVS+
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDDQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQ 136

HSP 2 Score: 42.743 bits (99), Expect = 1.435e-24
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 2

Query:  596 QKTTIKIADSGLAREINSRPP-FTEYVLTRWYRAPEVLPPDIPAHLQS*FLGQRRLSW------PNLLLPAPLFPG 802
            Q   +K+ D G AR + +    +T+YV TRWYRAPE+L  D+         G+    W        +L+  PLFPG
Sbjct:  136 QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVK-------YGKAVDVWAIGCLVTEMLMGEPLFPG 204

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: BUR1_EMENI (Serine/threonine-protein kinase bur1 OS=Emericella nidulans GN=ptkA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.436e-24
Identity = 52/149 (34.90%), Postives = 87/149 (58.39%), Query Frame = 1

Query:  178 FCSTRKMERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKK-MKKKYYSWEECVNLREVKSLRKMSHPNIVKLKEVI--------RENDILYFVFEYMECSLYQLMKDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVS 597
            F     +  ++ + ++G+GTFG V++A +K+ G +VA+KK +            LRE+K L+ +SH NI++L+E+         R+   +Y VF YME  L  L+++ E  FSEA+++ +  Q+ +GL Y+H     HRD+K  NLL+S
Sbjct:   16 FTGCTSIREFEFLGKLGEGTFGEVYKARAKRDGSIVALKKILMHNERDGFPITALREIKLLKMLSHTNIMQLREMAVERSKGEGRKKPSMYMVFPYMEHDLSGLLENPEVHFSEAQIKCYMIQLLEGLKYLHGNCILHRDMKAANLLIS 164

HSP 2 Score: 36.965 bits (84), Expect = 1.436e-24
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 2

Query:  608 IKIADSGLAREINSRPP------------FTEYVLTRWYRAPEVL 706
            ++IAD GLAR  +  PP            +T  V+TRWYR PE+L
Sbjct:  169 LQIADFGLARPFDEAPPQPGKGAGEAKRDYTTLVVTRWYRPPELL 213

[Close]

BLAST of DY271197 vs. ExPASy Swiss-Prot
Match: CDKL2_RAT (Cyclin-dependent kinase-like 2 OS=Rattus norvegicus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.438e-24
Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 1

Query:  196 MERYKLIKEVGDGTFGSVWRAISKQSGEVVAIKK-MKKKYYSWEECVNLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECSLYQLMKDREKCFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSK 600
            ME+Y+ +  VG+G++G V +  +K SG +VAIKK ++       + + +RE+K L+++ H N+V L EV ++    Y VFE+++ ++   +K          V+ + FQ+  G+ + H     HRD+KPEN+LVS+
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQ 136

HSP 2 Score: 42.743 bits (99), Expect = 1.438e-24
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 2

Query:  596 QKTTIKIADSGLAREINSRPP-FTEYVLTRWYRAPEVLPPDIPAHLQS*FLGQRRLSWP------NLLLPAPLFPG 802
            Q   +K+ D G AR + +    +T+YV TRWYRAPE+L  D+         G+    W        +L+  PLFPG
Sbjct:  136 QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVK-------YGKAVDIWAIGCLVIEMLMGQPLFPG 204

The following BLAST results are available for this feature:

BLAST of DY271197 vs. ExPASy Swiss-Prot

BLAST of DY271197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CDKD3_ARATH	1.110e-24	35.29	Cyclin-dependent kinase D-3 OS=Arabidopsis thalian...	[more]
CDK2_MOUSE	1.112e-24	36.96	Cell division protein kinase 2 OS=Mus musculus GN=...	[more]
CDK2_RAT	1.116e-24	36.96	Cell division protein kinase 2 OS=Rattus norvegicu...	[more]
CDK2_CRIGR	1.116e-24	36.96	Cell division protein kinase 2 OS=Cricetulus grise...	[more]
CDC2_VIGUN	1.116e-24	33.57	Cell division control protein 2 homolog OS=Vigna u...	[more]
CDC2A_ANTMA	1.116e-24	34.97	Cell division control protein 2 homolog A OS=Antir...	[more]
CDKL2_MOUSE	1.435e-24	33.82	Cyclin-dependent kinase-like 2 OS=Mus musculus GN=...	[more]
CDKL2_RABIT	1.435e-24	33.09	Cyclin-dependent kinase-like 2 OS=Oryctolagus cuni...	[more]
BUR1_EMENI	1.436e-24	34.90	Serine/threonine-protein kinase bur1 OS=Emericella...	[more]
CDKL2_RAT	1.438e-24	33.82	Cyclin-dependent kinase-like 2 OS=Rattus norvegicu...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP9YC24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY271197 ID=DY271197; Name=DY271197; organism=Citrus clementina; type=EST; length=900bp
GAAAACTTCTTGGTTTGTTCTCTCGCATATAGCTACGCAAAATTAATGTT
GGACTCAGCTGGACCAGTGGAACATTTTGTTTAAATTTAACAGTTTTTTC
TAGCAATTATCTTGGTACAATAAATGTCATATAACTTCAAAGGTTCTTAC
ACTTTTCTTGAATAAAGAAAGAGCTGTTTCTGTTCCACAAGGAAAATGGA
AAGGTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTCT
GGCGAGCTATTAGTAAGCAGTCTGGTGAAGTTGTTGCAATTAAAAAAATG
AAGAAAAAATATTATTCCTGGGAGGAGTGTGTCAATTTGAGAGAAGTTAA
GTCGCTACGGAAAATGAGTCATCCAAACATTGTGAAGCTTAAGGAAGTCA
TCCGGGAAAATGATATCTTGTACTTTGTTTTTGAATACATGGAATGTAGC
CTTTACCAACTTATGAAAGACAGAGAGAAGTGTTTCTCTGAAGCTGAAGT
CAGAAATTGGTGTTTCCAAGTTTTCCAAGGTCTGGCTTACATGCATCAGC
GGGGATATTTTCATCGTGACCTTAAGCCTGAGAACTTGCTTGTTTCAAAA
GACCACAATTAAAATTGCTGATTCTGGCCTTGCCCGTGAAATTAACTCAC
GTCCACCGTTCACGGAATACGTCCTCACCCGATGGTATCGAGCTCCTGAA
GTGCTGCCTCCAGACATACCTGCACACCTCCAAAGTTGATTCCTCGGGCA
ACGGAGGCTATCATGGCCAAATTTATTACTCCCCGCCCCTCTTTTCCCGG
GTACCCCCGGAACCCAATCTAAATGATCAAACCTCGTAGTGTATAAAGCC
ATCCCCACCACGGGAAATCTGGGACAGCAAGACACCCCTCCCGCGGTGAA