DY271199

Overview
NameDY271199
Unique NameDY271199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.028e-65
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +E V GT+ FSQ+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDENRHA            TA+FT+ D QIPL+GP SIIGR VVVHADPDDLGKGGHEL+KTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.028e-65
Identity = 119/152 (78.29%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +EGVKGT+ FSQEGDGPT+V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P+DENRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 6.871e-65
Identity = 117/151 (77.48%), Postives = 129/151 (85.43%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 506
            MVKAVAVL G+EGV+GTV F+QEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSKTTGNAGGR+ACG+IGLQ
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.172e-64
Identity = 114/152 (75.00%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +EGV GT+ F+Q  DGPTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PED+ RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.611e-64
Identity = 118/152 (77.63%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL GT+ VKGT+ FSQEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHG PEDE+RHA                 + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLAGTD-VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.410e-64
Identity = 115/152 (75.66%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +EGV GT+ F+Q+G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.454e-64
Identity = 116/152 (76.32%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVLG +EGV GT+ F+QEG+GPTTV+GSL+GLKPG HGFHVHALGDTTNGC+STG HFNP   EHG PEDENRHA            T +F++ D+QIPL+GPNSIIGRAVVVHAD DDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.454e-64
Identity = 115/152 (75.66%), Postives = 127/152 (83.55%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +  V GT++FSQEG+GPTTV+G+L+GLKPG HGFH+HALGDTTNGC+STGPHFNP GKEHG PEDE RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 7.597e-64
Identity = 118/153 (77.12%), Postives = 127/153 (83.01%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +EGV GT+ FSQE +G PTTV+G LSGLKPGPHGFHVHALGDTTNGCMSTGPH+NP GK+HG P+DE+RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.692e-63
Identity = 116/152 (76.32%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            M K VAVL  +EGV GT+ F+QEGDG TTVSG++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152          
The following BLAST results are available for this feature:
BLAST of DY271199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CAPAN4.028e-6576.97Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_ORYSJ4.028e-6578.29Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_ZANAE6.871e-6577.48Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CARPA1.172e-6475.00Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC2_MAIZE2.611e-6477.63Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC2_SOLLC3.410e-6475.66Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_SOYBN4.454e-6476.32Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_PEA4.454e-6475.66Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_SOLCS7.597e-6477.12Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_ARATH1.692e-6376.32Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271199 ID=DY271199; Name=DY271199; organism=Citrus clementina; type=EST; length=660bp
AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGC
ACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGG
AACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAA
GCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTT
GGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGC
TGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACT
TAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTT
GACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGT
TGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGA
GCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGC
CTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATA
TGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCA
AGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGA
ATGGTTTTCG
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