DY271199

Overview
NameDY271199
Unique NameDY271199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.816e-34
Identity = 76/152 (50.00%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKP-GPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            MVKAV VL G   + G V+F QE D  PTT+S  +S        GFH+   GD TNGC S GPHFNP GK HG   DENRH              +  ++ D  I L GP+S+IGR VV+HA  DDLGKGG++ S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIGV 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.816e-34
Identity = 73/152 (48.03%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            MVKAV V+ G   V G++ F QE +  PT ++  +SG       G H+H  GD TNGC S GPHFNP  K HG PED NRH              +  TV D+ + L GP S+IGR +VVH   DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVVRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.677e-34
Identity = 80/165 (48.48%), Postives = 96/165 (58.18%), Query Frame = 3
Query:   39 RSHSTMV------KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGG---HELSKTTGNAGGRVACGIIGL 503
            RSHS  +      +AVAVL G  GV G + F Q   G  TT+SGS+SGL PG HGFHVH  GD TNGC S G H+NP GK HG P D  +H              A   +    I L GP S+IG ++VVHA+ DDLG+G     E S  TGNAG R+ACG+IG+
Sbjct:   33 RSHSNGMHGNGARRAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGI 197          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.677e-34
Identity = 77/152 (50.66%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            MV AVAVL G   V G V F QE  D  T +S  ++G       GFH+H  GD TNGC S GPHFNP  K HG PEDE RH              +  ++ D  I L GP SI+GR VVVHA  DDLGKGG   S  TGNAG R ACG+IG+
Sbjct:    1 MVNAVAVLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGI 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.192e-34
Identity = 75/152 (49.34%), Postives = 93/152 (61.18%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDGPTTV-SGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 503
            +AVAVL G E V GT+  +Q+ +    V  G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P+ E RH              A   + D  + L GPN+++GR++VVHA  DDLG+G     E SK TGNAG R ACG+I L
Sbjct:   26 RAVAVLRG-ETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.397e-33
Identity = 79/150 (52.67%), Postives = 94/150 (62.67%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRH-AXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            MVKA+ V+ G   V GT+ FSQE +G P  V+G++SGL  G HGFH+H  GDT+NGC+S G HFNP   EHG P    RH               A   + DN I L G  SIIGR +VVH + DDLG GG+ LSKTTGNAG RVACGI+
Sbjct:    1 MVKAICVVKGAV-VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.825e-33
Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   69 AVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            AV GG      G +   Q G     ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HG PED NRH                  + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSKTTGNAG RVACG+IG+
Sbjct:   38 AVKGGNPAKTVGIIDLVQTGT-LVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.113e-33
Identity = 74/152 (48.68%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 503
            +AVAVL G + V GT+  +Q  +  P  + G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P  E RH              A   + D  I L G N++IGR++VVHA  DDLG+G     E S  TGNAG R ACG+I L
Sbjct:   26 RAVAVLRG-DVVSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVIAL 176          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.635e-32
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 3
Query:   57 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            +KA+ ++ G   V G + F QE  + P  +SG L  L  G HGFHVH  GDT+NGC S G HFNP  ++HG P+ E RH             + T   ++DN + L GP++IIGR++VVH D DDLG   H LSKTTGN+GGR+ CGII +
Sbjct:    1 MKAICIISGD--VHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGCGIIAI 149          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.495e-32
Identity = 68/149 (45.64%), Postives = 93/149 (62.42%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            MV A+ ++ G  GV+G V+ SQE +G P  ++G++SGL PG HG HVH  GDT+NGC+S G H+NP  +EHG P D  RH              AT ++ D  + L G  S++GR +V+H+D DD G+G    SKT G++G RV CGII
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
The following BLAST results are available for this feature:
BLAST of DY271199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PAESI2.816e-3450.00Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_COLGL2.816e-3448.03Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODE_ONCVO3.677e-3448.48Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_KLULA3.677e-3450.66Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_CAEEL8.192e-3449.34Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC4_DICDI1.397e-3352.67Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODE_HAECO1.825e-3348.63Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_CAEBR3.113e-3348.68Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_NPVAC2.635e-3247.02Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODC6_DICDI4.495e-3245.64Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271199 ID=DY271199; Name=DY271199; organism=Citrus clementina; type=EST; length=660bp
AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGC
ACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGG
AACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAA
GCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTT
GGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGC
TGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACT
TAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTT
GACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGT
TGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGA
GCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGC
CTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATA
TGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCA
AGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGA
ATGGTTTTCG
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